Variant report

Variant	rs28485272
Chromosome Location	chr4:143585347-143585348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143392755..143395634-chr4:143584143..143586115,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10000770	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10006418	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10015404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10020322	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10020865	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732693	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13103597	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs13114437	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13353799	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1348362	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348363	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28415364	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28673920	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28733118	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28758601	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34082059	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34234953	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34393544	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34626802	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34699252	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35255414	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35366693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36101393	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36142547	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60361448	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62330251	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62331862	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6834451	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6849164	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6856817	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143578600-143600600	Weak transcription	Fetal Heart	heart
2	chr4:143581600-143596600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr4:143583000-143588000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:143584800-143585600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:143584800-143585600	Enhancers	Osteobl	bone
6	chr4:143585000-143585600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr4:143585000-143586400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:143585200-143585400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
9	chr4:143585200-143585400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr4:143585200-143585600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:143585200-143585600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:143585200-143585600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:143585200-143585600	Enhancers	Placenta	Placenta
14	chr4:143585200-143585600	Enhancers	Left Ventricle	heart
15	chr4:143585200-143585600	ZNF genes & repeats	Pancreas	Pancrea
16	chr4:143585200-143585600	Enhancers	Right Ventricle	heart
17	chr4:143585200-143585600	Enhancers	HSMM	muscle
18	chr4:143585200-143585600	Enhancers	HSMMtube	muscle

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