Variant report

Variant	rs28488446
Chromosome Location	chr15:58662353-58662354
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58558694..58560584-chr15:58661911..58664219,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13329321	1.00[EUR][1000 genomes]
rs13329416	1.00[EUR][1000 genomes]
rs16940111	1.00[EUR][1000 genomes]
rs16940115	1.00[EUR][1000 genomes]
rs28405107	1.00[EUR][1000 genomes]
rs28449499	1.00[EUR][1000 genomes]
rs28457584	1.00[EUR][1000 genomes]
rs28621988	1.00[EUR][1000 genomes]
rs28668323	1.00[EUR][1000 genomes]
rs28706087	1.00[EUR][1000 genomes]
rs28849098	1.00[EUR][1000 genomes]
rs28879975	1.00[EUR][1000 genomes]
rs57112568	1.00[EUR][1000 genomes]
rs57213406	1.00[EUR][1000 genomes]
rs58293663	1.00[EUR][1000 genomes]
rs7164322	0.87[AMR][1000 genomes]
rs7181176	0.87[AMR][1000 genomes]
rs73418661	1.00[EUR][1000 genomes]
rs9920110	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv904266	chr15:58580921-58689187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58656000-58663600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr15:58661200-58662400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:58661200-58662400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr15:58661200-58662400	Enhancers	Liver	Liver
5	chr15:58661400-58662400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr15:58661400-58662400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:58661400-58662400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
8	chr15:58661400-58662400	Enhancers	Fetal Thymus	thymus
9	chr15:58661400-58662400	Enhancers	Placenta Amnion	Placenta Amnion
10	chr15:58661400-58662400	Enhancers	HSMMtube	muscle
11	chr15:58661400-58662800	Enhancers	HSMM	muscle
12	chr15:58661600-58662400	Enhancers	Primary T cells from cord blood	blood
13	chr15:58661600-58662400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr15:58661600-58662400	Enhancers	Fetal Kidney	kidney
15	chr15:58662000-58662400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr15:58662000-58662400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:58662000-58662400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:58662000-58662400	Flanking Active TSS	GM12878-XiMat	blood
19	chr15:58662200-58662400	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr15:58662200-58662400	Enhancers	Osteobl	bone
21	chr15:58662200-58662600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:58662200-58662600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:58662200-58663800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr15:58662200-58665600	Weak transcription	Muscle Satellite Cultured Cells	--

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