Variant report

Variant	rs284887
Chromosome Location	chr15:76728830-76728831
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10220790	1.00[AMR][1000 genomes]
rs12708522	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1499019	1.00[AMR][1000 genomes]
rs1499020	1.00[AMR][1000 genomes]
rs1499022	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs1533600	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs157764	1.00[AMR][1000 genomes]
rs157765	1.00[AMR][1000 genomes]
rs157767	1.00[AMR][1000 genomes]
rs157770	1.00[AMR][1000 genomes]
rs157771	0.83[AMR][1000 genomes]
rs157772	1.00[AMR][1000 genomes]
rs157773	1.00[AMR][1000 genomes]
rs157774	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs157781	1.00[AMR][1000 genomes]
rs157782	1.00[AMR][1000 genomes]
rs157784	1.00[AMR][1000 genomes]
rs157786	0.88[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs157792	1.00[AMR][1000 genomes]
rs157793	1.00[AMR][1000 genomes]
rs166905	1.00[AMR][1000 genomes]
rs166932	1.00[AMR][1000 genomes]
rs1810347	1.00[AMR][1000 genomes]
rs1814764	1.00[AMR][1000 genomes]
rs185860	1.00[AMR][1000 genomes]
rs1878877	0.88[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs190782	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2037306	1.00[AMR][1000 genomes]
rs2176622	0.94[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2244050	0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2245180	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2247488	0.94[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2404735	1.00[AMR][1000 genomes]
rs2405329	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2405330	1.00[AMR][1000 genomes]
rs2439983	1.00[AMR][1000 genomes]
rs2456030	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456032	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456034	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456035	1.00[AMR][1000 genomes]
rs2456036	1.00[AMR][1000 genomes]
rs2456037	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456038	1.00[AMR][1000 genomes]
rs2456039	1.00[AMR][1000 genomes]
rs2456043	0.83[AMR][1000 genomes]
rs2456056	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs2456058	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456059	0.88[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456062	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456064	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456068	0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456069	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456077	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2459364	1.00[AMR][1000 genomes]
rs2460141	1.00[AMR][1000 genomes]
rs2460143	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs2460149	1.00[AMR][1000 genomes]
rs2460157	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2460159	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2468117	1.00[AMR][1000 genomes]
rs2468125	1.00[AMR][1000 genomes]
rs2469209	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469217	0.87[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469218	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs2469219	1.00[AMR][1000 genomes]
rs2469220	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469221	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469223	1.00[AMR][1000 genomes]
rs2469240	1.00[AMR][1000 genomes]
rs2469243	1.00[AMR][1000 genomes]
rs2469536	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469537	0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469545	0.94[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469546	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469549	0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469550	0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469551	1.00[AMR][1000 genomes]
rs2469553	1.00[AMR][1000 genomes]
rs2469571	1.00[AMR][1000 genomes]
rs2469572	0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469574	1.00[AMR][1000 genomes]
rs2516308	1.00[AMR][1000 genomes]
rs279998	0.83[AMR][1000 genomes]
rs283786	1.00[AMR][1000 genomes]
rs283788	1.00[AMR][1000 genomes]
rs283790	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs283792	1.00[AMR][1000 genomes]
rs283794	1.00[AMR][1000 genomes]
rs283797	1.00[AMR][1000 genomes]
rs283798	0.83[AMR][1000 genomes]
rs283800	0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs284879	1.00[AMR][1000 genomes]
rs284882	1.00[AMR][1000 genomes]
rs284888	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs284889	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs284890	1.00[AMR][1000 genomes]
rs284894	0.83[AMR][1000 genomes]
rs284900	1.00[AMR][1000 genomes]
rs2938692	1.00[AMR][1000 genomes]
rs2938693	1.00[AMR][1000 genomes]
rs2938694	0.83[AMR][1000 genomes]
rs2938696	1.00[AMR][1000 genomes]
rs2938698	1.00[AMR][1000 genomes]
rs2944379	1.00[AMR][1000 genomes]
rs2944380	1.00[AMR][1000 genomes]
rs2948702	1.00[AMR][1000 genomes]
rs2956872	1.00[AMR][1000 genomes]
rs2957558	1.00[AMR][1000 genomes]
rs2957608	1.00[AMR][1000 genomes]
rs415439	1.00[AMR][1000 genomes]
rs426225	0.83[AMR][1000 genomes]
rs4886797	1.00[AMR][1000 genomes]
rs542148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs560598	1.00[AMR][1000 genomes]
rs598011	1.00[AMR][1000 genomes]
rs6495202	1.00[AMR][1000 genomes]
rs654416	1.00[AMR][1000 genomes]
rs7164815	1.00[AMR][1000 genomes]
rs8040818	1.00[AMR][1000 genomes]
rs937731	1.00[AMR][1000 genomes]
rs937734	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76711600-76767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:76717000-76739000	Weak transcription	Gastric	stomach
3	chr15:76718000-76732800	Weak transcription	Brain Hippocampus Middle	brain
4	chr15:76718600-76730400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:76718800-76732000	Weak transcription	Fetal Stomach	stomach
6	chr15:76718800-76736200	Weak transcription	Lung	lung
7	chr15:76720200-76731600	Weak transcription	Brain Angular Gyrus	brain
8	chr15:76720800-76763600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:76721600-76740200	Weak transcription	Primary B cells from cord blood	blood
10	chr15:76721800-76734600	Weak transcription	Brain Anterior Caudate	brain
11	chr15:76723000-76730000	Weak transcription	Fetal Intestine Large	intestine
12	chr15:76723000-76739400	Weak transcription	Fetal Intestine Small	intestine
13	chr15:76723000-76757600	Weak transcription	Aorta	Aorta
14	chr15:76724600-76749400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:76725000-76730800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:76725200-76731600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr15:76725200-76733400	Weak transcription	Liver	Liver
18	chr15:76725800-76731000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:76725800-76754400	Weak transcription	Ovary	ovary
20	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
21	chr15:76726000-76747200	Weak transcription	Primary T cells from cord blood	blood
22	chr15:76726400-76729000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr15:76726400-76733800	Weak transcription	Fetal Heart	heart
24	chr15:76726800-76731400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr15:76727400-76731200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr15:76727600-76731200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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