Variant report

Variant	rs284894
Chromosome Location	chr15:76718022-76718023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10220790	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12708522	0.83[AMR][1000 genomes]
rs1499019	0.83[AMR][1000 genomes]
rs1499020	0.83[AMR][1000 genomes]
rs1499022	0.83[AMR][1000 genomes]
rs1533600	0.83[AMR][1000 genomes]
rs157764	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157765	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157767	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157770	0.83[AMR][1000 genomes]
rs157772	0.83[AMR][1000 genomes]
rs157773	0.83[AMR][1000 genomes]
rs157774	0.83[AMR][1000 genomes]
rs157781	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157782	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157784	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157786	0.83[AMR][1000 genomes]
rs157792	0.83[AMR][1000 genomes]
rs157793	0.83[AMR][1000 genomes]
rs166905	0.83[AMR][1000 genomes]
rs166932	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1810347	0.83[AMR][1000 genomes]
rs1814764	0.83[AMR][1000 genomes]
rs185860	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1878877	0.83[AMR][1000 genomes]
rs190782	0.83[AMR][1000 genomes]
rs2037306	0.83[AMR][1000 genomes]
rs2176622	0.83[AMR][1000 genomes]
rs2244050	0.83[AMR][1000 genomes]
rs2245180	0.83[AMR][1000 genomes]
rs2247488	0.83[AMR][1000 genomes]
rs2250805	0.83[AMR][1000 genomes]
rs2404735	0.83[AMR][1000 genomes]
rs2405329	0.83[AMR][1000 genomes]
rs2405330	0.83[AMR][1000 genomes]
rs2439983	0.83[AMR][1000 genomes]
rs2456030	0.83[AMR][1000 genomes]
rs2456032	0.83[AMR][1000 genomes]
rs2456034	0.83[AMR][1000 genomes]
rs2456035	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2456036	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2456037	0.83[AMR][1000 genomes]
rs2456038	0.83[AMR][1000 genomes]
rs2456039	0.83[AMR][1000 genomes]
rs2456044	0.83[AMR][1000 genomes]
rs2456056	0.83[AMR][1000 genomes]
rs2456058	0.83[AMR][1000 genomes]
rs2456059	0.83[AMR][1000 genomes]
rs2456062	0.83[AMR][1000 genomes]
rs2456064	0.83[AMR][1000 genomes]
rs2456068	0.83[AMR][1000 genomes]
rs2456069	0.83[AMR][1000 genomes]
rs2456077	0.83[AMR][1000 genomes]
rs2459364	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2460141	0.83[AMR][1000 genomes]
rs2460143	0.83[AMR][1000 genomes]
rs2460149	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2460157	0.83[AMR][1000 genomes]
rs2460159	0.83[AMR][1000 genomes]
rs2468117	0.83[AMR][1000 genomes]
rs2468125	0.83[AMR][1000 genomes]
rs2469209	0.83[AMR][1000 genomes]
rs2469217	0.83[AMR][1000 genomes]
rs2469218	0.83[AMR][1000 genomes]
rs2469219	0.83[AMR][1000 genomes]
rs2469220	0.83[AMR][1000 genomes]
rs2469221	0.83[AMR][1000 genomes]
rs2469223	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2469240	0.83[AMR][1000 genomes]
rs2469243	0.83[AMR][1000 genomes]
rs2469536	0.83[AMR][1000 genomes]
rs2469537	0.83[AMR][1000 genomes]
rs2469540	0.83[AMR][1000 genomes]
rs2469545	0.83[AMR][1000 genomes]
rs2469546	0.83[AMR][1000 genomes]
rs2469549	0.83[AMR][1000 genomes]
rs2469550	0.83[AMR][1000 genomes]
rs2469551	0.83[AMR][1000 genomes]
rs2469553	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2469557	0.85[AFR][1000 genomes]
rs2469571	0.83[AMR][1000 genomes]
rs2469572	0.83[AMR][1000 genomes]
rs2469574	0.83[AMR][1000 genomes]
rs2516308	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs283786	0.83[AMR][1000 genomes]
rs283788	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs283790	0.83[AMR][1000 genomes]
rs283792	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs283794	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs283797	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs283798	0.90[AFR][1000 genomes]
rs283800	0.83[AMR][1000 genomes]
rs284879	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs284882	0.83[AMR][1000 genomes]
rs284887	0.83[AMR][1000 genomes]
rs284888	0.83[AMR][1000 genomes]
rs284889	0.83[AMR][1000 genomes]
rs284890	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs284900	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2938692	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2938693	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2938694	0.90[AFR][1000 genomes]
rs2938696	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2938698	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2944379	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2944380	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2948702	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2956872	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2957558	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2957608	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs415439	0.83[AMR][1000 genomes]
rs416812	1.00[AFR][1000 genomes]
rs426225	0.90[AFR][1000 genomes]
rs4886797	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs542148	0.83[AMR][1000 genomes]
rs560598	0.83[AMR][1000 genomes]
rs598011	0.83[AMR][1000 genomes]
rs6495202	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs654416	0.83[AMR][1000 genomes]
rs7164815	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8040818	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs937731	0.83[AMR][1000 genomes]
rs937734	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76639800-76727400	Weak transcription	Right Ventricle	heart
2	chr15:76673200-76727400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:76674600-76718400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:76684800-76718200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:76693600-76720400	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:76695800-76726000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr15:76696600-76720600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr15:76697000-76718400	Weak transcription	Ovary	ovary
9	chr15:76697000-76719200	Weak transcription	Primary T cells from cord blood	blood
10	chr15:76697000-76720800	Weak transcription	Aorta	Aorta
11	chr15:76697000-76722200	Weak transcription	Spleen	Spleen
12	chr15:76697000-76723400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr15:76697000-76724000	Weak transcription	Brain Substantia Nigra	brain
14	chr15:76697000-76724400	Weak transcription	Pancreas	Pancrea
15	chr15:76697000-76726000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr15:76697000-76726400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr15:76697200-76720400	Weak transcription	Liver	Liver
18	chr15:76711200-76720800	Weak transcription	Left Ventricle	heart
19	chr15:76711600-76721400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:76711600-76728400	Weak transcription	Placenta	Placenta
21	chr15:76711600-76767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:76713000-76720600	Weak transcription	Primary B cells from cord blood	blood
23	chr15:76716600-76718400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr15:76716600-76725800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr15:76717000-76739000	Weak transcription	Gastric	stomach
26	chr15:76717400-76722200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:76717400-76724800	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr15:76717600-76724200	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr15:76717600-76726000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr15:76718000-76718400	Weak transcription	Fetal Intestine Large	intestine
31	chr15:76718000-76732800	Weak transcription	Brain Hippocampus Middle	brain

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