Variant report

Variant	rs284896
Chromosome Location	chr15:76750764-76750765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10220790	1.00[YRI][hapmap]
rs1499019	0.81[YRI][hapmap]
rs1499020	0.81[YRI][hapmap]
rs157764	0.89[YRI][hapmap]
rs157770	0.81[YRI][hapmap]
rs157771	0.81[YRI][hapmap]
rs157772	0.90[YRI][hapmap]
rs157773	0.81[YRI][hapmap]
rs157781	1.00[YRI][hapmap]
rs157782	1.00[YRI][hapmap]
rs157793	0.94[YRI][hapmap]
rs166932	1.00[YRI][hapmap]
rs185860	1.00[YRI][hapmap]
rs2454452	0.83[YRI][hapmap]
rs2456035	1.00[YRI][hapmap]
rs2456036	0.94[YRI][hapmap]
rs2459364	1.00[YRI][hapmap]
rs2468117	0.90[YRI][hapmap]
rs283788	1.00[YRI][hapmap]
rs283792	1.00[YRI][hapmap]
rs283794	1.00[YRI][hapmap]
rs283798	1.00[YRI][hapmap]
rs284879	1.00[YRI][hapmap]
rs284890	1.00[YRI][hapmap]
rs2938692	0.94[YRI][hapmap]
rs2938693	0.94[YRI][hapmap]
rs2938696	0.94[YRI][hapmap]
rs2938698	0.94[YRI][hapmap]
rs2944379	0.94[YRI][hapmap]
rs2944380	0.94[YRI][hapmap]
rs2956872	0.94[YRI][hapmap]
rs2957558	0.94[YRI][hapmap]
rs2957608	1.00[YRI][hapmap]
rs2957609	0.94[YRI][hapmap]
rs4886797	0.94[YRI][hapmap]
rs598011	0.89[YRI][hapmap]
rs6495202	0.94[YRI][hapmap]
rs8040818	1.00[YRI][hapmap]
rs937734	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76711600-76767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:76720800-76763600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:76723000-76757600	Weak transcription	Aorta	Aorta
4	chr15:76725800-76754400	Weak transcription	Ovary	ovary
5	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
6	chr15:76740600-76757600	Weak transcription	Fetal Intestine Small	intestine
7	chr15:76741000-76757600	Weak transcription	Primary B cells from cord blood	blood
8	chr15:76742800-76762400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:76746600-76753000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr15:76749600-76751000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:76749800-76750800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr15:76750400-76763800	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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