Variant report

Variant	rs28489887
Chromosome Location	chr6:11994083-11994084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10456088	0.81[ASN][1000 genomes]
rs12189667	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12190182	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12190917	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12191113	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192522	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12198183	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12199764	0.82[ASN][1000 genomes]
rs12202320	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12202388	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12202981	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12204035	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12205721	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12208282	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12210876	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12212747	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12213062	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12213771	0.91[ASN][1000 genomes]
rs12216165	1.00[EUR][1000 genomes]
rs28888496	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57671359	0.82[ASN][1000 genomes]
rs58002962	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60027663	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60683973	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60765903	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6939106	1.00[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11990800-12007200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:11994000-11996600	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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