Variant report

Variant	rs284906
Chromosome Location	chr15:76741739-76741740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10152388	1.00[EUR][1000 genomes]
rs157579	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs182253	0.81[MKK][hapmap];0.81[YRI][hapmap]
rs2078437	0.81[MKK][hapmap]
rs2404739	1.00[EUR][1000 genomes]
rs2439991	0.81[YRI][hapmap]
rs2460161	0.81[MKK][hapmap]
rs2469225	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2469242	0.85[YRI][hapmap]
rs283796	0.81[YRI][hapmap]
rs2957559	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2957607	0.81[MKK][hapmap]
rs2957610	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3878209	1.00[CEU][hapmap]
rs494268	0.81[YRI][hapmap]
rs8032258	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76711600-76767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:76720800-76763600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:76723000-76757600	Weak transcription	Aorta	Aorta
4	chr15:76724600-76749400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:76725800-76754400	Weak transcription	Ovary	ovary
6	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
7	chr15:76726000-76747200	Weak transcription	Primary T cells from cord blood	blood
8	chr15:76740600-76757600	Weak transcription	Fetal Intestine Small	intestine
9	chr15:76740800-76742000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr15:76741000-76757600	Weak transcription	Primary B cells from cord blood	blood
11	chr15:76741400-76743000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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