Variant report

Variant	rs28491220
Chromosome Location	chr8:10822126-10822127
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10811750..10814627-chr8:10819721..10822751,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10102369	0.87[AFR][1000 genomes]
rs10112255	0.84[AFR][1000 genomes]
rs11250100	0.89[AFR][1000 genomes]
rs11985330	0.82[AFR][1000 genomes]
rs11995188	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv521721	chr8:10802102-10836472	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10818400-10822200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:10818800-10822200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:10819000-10822200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:10819000-10822200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:10819000-10822800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:10819400-10822200	Weak transcription	Fetal Brain Male	brain
7	chr8:10819400-10822200	Weak transcription	Fetal Brain Female	brain
8	chr8:10819400-10822400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:10819400-10822800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:10819600-10823000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr8:10819800-10823000	Weak transcription	Brain Germinal Matrix	brain
12	chr8:10820000-10822600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr8:10820000-10822600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr8:10820000-10822600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr8:10820000-10822600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:10820000-10822600	Weak transcription	Brain Anterior Caudate	brain
17	chr8:10820000-10822800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr8:10820000-10822800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr8:10820000-10822800	Weak transcription	GM12878-XiMat	blood
20	chr8:10822000-10822600	Enhancers	Primary T cells fromperipheralblood	blood

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