Variant report

Variant	rs28493423
Chromosome Location	chr11:109118929-109118930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:109118774..109120383-chr11:109121444..109124055,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10047461	0.86[ASN][1000 genomes]
rs11213005	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11213006	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11213011	0.83[ASN][1000 genomes]
rs11213020	0.83[ASN][1000 genomes]
rs11213021	0.83[ASN][1000 genomes]
rs11213022	0.83[ASN][1000 genomes]
rs11501032	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12273587	0.83[ASN][1000 genomes]
rs12274062	0.97[ASN][1000 genomes]
rs12274450	0.97[ASN][1000 genomes]
rs12278048	0.81[ASN][1000 genomes]
rs12278123	0.97[ASN][1000 genomes]
rs12278419	0.89[ASN][1000 genomes]
rs12280588	0.81[ASN][1000 genomes]
rs12280688	0.83[ASN][1000 genomes]
rs12281817	0.81[ASN][1000 genomes]
rs12282239	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12282578	0.83[ASN][1000 genomes]
rs12283341	0.83[ASN][1000 genomes]
rs12286507	0.81[ASN][1000 genomes]
rs12286661	0.83[ASN][1000 genomes]
rs12291774	0.83[ASN][1000 genomes]
rs12291996	0.83[ASN][1000 genomes]
rs17109266	0.81[ASN][1000 genomes]
rs17109316	0.97[ASN][1000 genomes]
rs55719520	0.83[ASN][1000 genomes]
rs59169120	0.97[ASN][1000 genomes]
rs59771014	0.83[ASN][1000 genomes]
rs60395902	0.83[ASN][1000 genomes]
rs60528878	0.86[ASN][1000 genomes]
rs60529773	0.81[ASN][1000 genomes]
rs60677425	0.82[ASN][1000 genomes]
rs60773539	0.83[ASN][1000 genomes]
rs73549130	0.81[ASN][1000 genomes]
rs73549140	0.81[ASN][1000 genomes]
rs73549142	0.81[ASN][1000 genomes]
rs73549144	0.81[ASN][1000 genomes]
rs73549154	0.81[ASN][1000 genomes]
rs73550605	0.83[ASN][1000 genomes]
rs7947836	0.93[ASN][1000 genomes]
rs906911	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1053898	chr11:109075527-109140982	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1041669	chr11:109085822-109282528	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1851153	chr11:109097430-109156782	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109117800-109120200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:109118000-109119400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:109118000-109119600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:109118200-109119600	Weak transcription	Osteobl	bone
5	chr11:109118200-109120200	Weak transcription	NHEK	skin
6	chr11:109118200-109120400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:109118400-109120600	Weak transcription	HMEC	breast

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