Variant report

Variant	rs28496010
Chromosome Location	chr4:48195507-48195508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10000735	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13146503	0.87[AFR][1000 genomes]
rs17471142	0.89[EUR][1000 genomes]
rs28491198	0.83[AFR][1000 genomes]
rs4695356	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482316	chr4:48151953-48338746	Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1006853	chr4:48164958-48196335	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2763359	chr4:48189710-48290233	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48185800-48197000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:48188600-48196000	Weak transcription	Lung	lung
3	chr4:48190200-48195800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:48190400-48197400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr4:48190400-48222000	Weak transcription	Fetal Intestine Small	intestine
6	chr4:48190600-48207200	Weak transcription	Spleen	Spleen
7	chr4:48191400-48197400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:48194800-48197400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr4:48194800-48198400	Enhancers	Fetal Thymus	thymus
10	chr4:48194800-48198800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr4:48195000-48195800	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr4:48195000-48199000	Enhancers	K562	blood
13	chr4:48195000-48208200	Enhancers	Primary B cells from peripheral blood	blood
14	chr4:48195200-48196400	Enhancers	Duodenum Mucosa	Duodenum
15	chr4:48195200-48199400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr4:48195400-48195600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
17	chr4:48195400-48198600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:48195400-48198600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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