Variant report

Variant	rs28504492
Chromosome Location	chr4:143739090-143739091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10029622	0.96[ASN][1000 genomes]
rs13106530	0.84[ASN][1000 genomes]
rs1441416	0.90[EUR][1000 genomes]
rs28715653	0.96[ASN][1000 genomes]
rs7683763	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143732000-143744600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr4:143732600-143745000	Weak transcription	Left Ventricle	heart
3	chr4:143732600-143749600	Weak transcription	Right Ventricle	heart
4	chr4:143736000-143740600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:143737800-143739600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr4:143738000-143739400	Enhancers	HMEC	breast
7	chr4:143738000-143739600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:143738000-143740200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:143738200-143739200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:143738200-143739400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr4:143738200-143739400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr4:143738400-143739200	Enhancers	A549	lung
13	chr4:143738400-143739400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr4:143738400-143739400	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr4:143738400-143739400	Enhancers	NHEK	skin
16	chr4:143738400-143739600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:143738400-143739600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:143738400-143739600	Flanking Active TSS	Dnd41	blood
19	chr4:143738400-143740000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:143738400-143740200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:143738400-143740200	Enhancers	Fetal Lung	lung
22	chr4:143738400-143741200	Enhancers	Fetal Heart	heart
23	chr4:143738600-143739200	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr4:143738600-143739200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr4:143738600-143739200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr4:143738600-143739400	Enhancers	Adipose Nuclei	Adipose
27	chr4:143738600-143739400	Enhancers	Pancreas	Pancrea
28	chr4:143738600-143739400	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr4:143738600-143739400	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr4:143738600-143739600	Enhancers	Aorta	Aorta
31	chr4:143738600-143739600	Flanking Active TSS	NH-A	brain
32	chr4:143738600-143740000	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr4:143738600-143740000	Enhancers	Ovary	ovary
34	chr4:143738600-143740200	Enhancers	Fetal Muscle Leg	muscle
35	chr4:143738800-143739800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr4:143738800-143740400	Weak transcription	Small Intestine	intestine
37	chr4:143738800-143740600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr4:143738800-143740600	Enhancers	Hela-S3	cervix
39	chr4:143738800-143742400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr4:143739000-143739200	Enhancers	Stomach Smooth Muscle	stomach
41	chr4:143739000-143739400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr4:143739000-143739400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:143739000-143739400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr4:143739000-143739400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr4:143739000-143739400	Flanking Active TSS	HSMM	muscle
46	chr4:143739000-143739400	Flanking Active TSS	HSMMtube	muscle
47	chr4:143739000-143739400	Flanking Active TSS	NHDF-Ad	bronchial
48	chr4:143739000-143739400	Flanking Active TSS	NHLF	lung
49	chr4:143739000-143739600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr4:143739000-143739600	Flanking Active TSS	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links