Variant report

Variant	rs28505725
Chromosome Location	chr14:70421489-70421490
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70420468..70422147-chr14:70424246..70425888,2	MCF-7	breast:
2	chr14:70414180..70416147-chr14:70421298..70424098,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10129698	1.00[EUR][1000 genomes]
rs10130124	1.00[EUR][1000 genomes]
rs10137162	1.00[EUR][1000 genomes]
rs10144834	0.92[AFR][1000 genomes]
rs10146486	1.00[EUR][1000 genomes]
rs10150925	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12164873	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1275845	1.00[EUR][1000 genomes]
rs1952203	1.00[EUR][1000 genomes]
rs28445972	1.00[EUR][1000 genomes]
rs28524787	1.00[EUR][1000 genomes]
rs28633309	1.00[EUR][1000 genomes]
rs7154537	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832824	chr14:70320639-70511401	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70414800-70437400	Strong transcription	Hela-S3	cervix
2	chr14:70415400-70434400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:70415800-70444600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr14:70416000-70422600	Weak transcription	Brain Substantia Nigra	brain
5	chr14:70416200-70421800	Weak transcription	Brain Hippocampus Middle	brain
6	chr14:70417800-70422000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:70417800-70424000	Enhancers	Fetal Brain Male	brain
8	chr14:70418200-70421800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:70418400-70423600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:70418600-70422600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:70418800-70421600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr14:70418800-70422000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:70418800-70448600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr14:70419200-70421800	Strong transcription	Liver	Liver
15	chr14:70419200-70422000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr14:70419200-70423800	Weak transcription	Spleen	Spleen
17	chr14:70419600-70422000	Strong transcription	HepG2	liver
18	chr14:70419600-70422600	Weak transcription	Brain Anterior Caudate	brain
19	chr14:70420000-70421600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr14:70420800-70423600	Weak transcription	Psoas Muscle	Psoas
21	chr14:70421000-70422600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr14:70421000-70424200	Enhancers	Fetal Brain Female	brain
23	chr14:70421200-70421800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:70421200-70423400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr14:70421400-70422400	Weak transcription	Brain Germinal Matrix	brain
26	chr14:70421400-70422800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr14:70421400-70430200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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