Variant report

Variant	rs28509286
Chromosome Location	chr15:76754480-76754481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76750077..76752606-chr15:76753923..76755525,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12101929	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16968349	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2468124	1.00[EUR][1000 genomes]
rs28646074	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28872583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55666147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56312206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7169825	1.00[AMR][1000 genomes]
rs7174835	1.00[AMR][1000 genomes]
rs74024123	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024164	1.00[EUR][1000 genomes]
rs8025581	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8027086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8032219	1.00[AMR][1000 genomes]
rs9783735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76711600-76767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:76720800-76763600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:76723000-76757600	Weak transcription	Aorta	Aorta
4	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
5	chr15:76740600-76757600	Weak transcription	Fetal Intestine Small	intestine
6	chr15:76741000-76757600	Weak transcription	Primary B cells from cord blood	blood
7	chr15:76742800-76762400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:76750400-76763800	Weak transcription	Placenta	Placenta
9	chr15:76753200-76757800	Weak transcription	Liver	Liver
10	chr15:76753200-76762800	Weak transcription	Esophagus	oesophagus
11	chr15:76753400-76760800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr15:76753600-76761600	Weak transcription	Adipose Nuclei	Adipose
13	chr15:76753800-76764400	Weak transcription	Fetal Intestine Large	intestine
14	chr15:76754000-76754600	ZNF genes & repeats	Primary T cells from cord blood	blood
15	chr15:76754000-76754600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:76754000-76757600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:76754000-76764400	Weak transcription	Brain Hippocampus Middle	brain
18	chr15:76754200-76754800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
19	chr15:76754200-76763600	Weak transcription	Pancreas	Pancrea
20	chr15:76754400-76754600	Active TSS	Sigmoid Colon	Sigmoid Colon
21	chr15:76754400-76754800	ZNF genes & repeats	Ovary	ovary
22	chr15:76754400-76763600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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