The 2.0 version of rSNPBase

Variant report

Variant rs28509440
Chromosome Location chr12:123886500-123886501
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:123875200-123894400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr12:123875600-123894200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr12:123875600-123895600 Strong transcription Fetal Thymus thymus
4 chr12:123875800-123894000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr12:123876400-123894800 Strong transcription Fetal Intestine Small intestine
6 chr12:123876600-123894800 Strong transcription Fetal Adrenal Gland Adrenal Gland
7 chr12:123876800-123887600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
8 chr12:123877400-123889000 Weak transcription Fetal Heart heart
9 chr12:123877400-123895600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
10 chr12:123881600-123887200 Weak transcription Small Intestine intestine
11 chr12:123881600-123888200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
12 chr12:123881600-123888400 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr12:123881600-123888600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr12:123881600-123889000 Weak transcription Fetal Brain Male brain
15 chr12:123881800-123886800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr12:123881800-123887200 Weak transcription Primary B cells from cord blood blood
17 chr12:123881800-123888800 Weak transcription Pancreatic Islets Pancreatic Islet
18 chr12:123881800-123889000 Weak transcription Fetal Kidney kidney
19 chr12:123882000-123886800 Weak transcription HepG2 liver
20 chr12:123882000-123888600 Weak transcription Primary T helper naive cells from peripheral blood blood
21 chr12:123882000-123911600 Weak transcription Primary T killer memory cells from peripheral blood blood
22 chr12:123883200-123895400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
23 chr12:123883800-123894200 Strong transcription HUVEC blood vessel
24 chr12:123883800-123895200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
25 chr12:123884000-123886600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
26 chr12:123884000-123886600 Weak transcription Duodenum Mucosa Duodenum
27 chr12:123884000-123886600 Strong transcription Fetal Stomach stomach
28 chr12:123884000-123887800 Weak transcription Primary hematopoietic stem cells blood
29 chr12:123884000-123888800 Weak transcription Psoas Muscle Psoas
30 chr12:123884200-123886600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr12:123884200-123886600 Weak transcription Primary B cells from peripheral blood blood
32 chr12:123884200-123886600 Weak transcription Primary T helper naive cells fromperipheralblood blood
33 chr12:123884200-123886600 Weak transcription Brain Angular Gyrus brain
34 chr12:123884200-123886600 Weak transcription Brain Anterior Caudate brain
35 chr12:123884200-123886600 Weak transcription Brain Hippocampus Middle brain
36 chr12:123884200-123886600 Weak transcription Brain Substantia Nigra brain
37 chr12:123884200-123886600 Weak transcription Duodenum Smooth Muscle Duodenum
38 chr12:123884200-123886600 Weak transcription Gastric stomach
39 chr12:123884200-123886600 Weak transcription Rectal Mucosa Donor 29 rectum
40 chr12:123884200-123886600 Weak transcription A549 lung
41 chr12:123884200-123886600 Weak transcription GM12878-XiMat blood
42 chr12:123884200-123886600 Weak transcription HSMMtube muscle
43 chr12:123884200-123886600 Weak transcription NHDF-Ad bronchial
44 chr12:123884200-123886800 Weak transcription Muscle Satellite Cultured Cells --
45 chr12:123884200-123886800 Weak transcription Colonic Mucosa Colon
46 chr12:123884200-123886800 Weak transcription Colon Smooth Muscle Colon
47 chr12:123884200-123886800 Weak transcription Esophagus oesophagus
48 chr12:123884200-123886800 Weak transcription NHEK skin
49 chr12:123884200-123887000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr12:123884200-123887000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood

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Last update: Aug 31, 2015