Variant report

Variant	rs2851007
Chromosome Location	chr4:102146171-102146172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1472826	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1561720	1.00[YRI][hapmap]
rs17030909	1.00[YRI][hapmap]
rs17030955	1.00[YRI][hapmap]
rs17030957	1.00[YRI][hapmap]
rs17031008	1.00[YRI][hapmap]
rs17031015	1.00[YRI][hapmap]
rs17031085	1.00[YRI][hapmap]
rs2659515	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2659524	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2659526	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2659528	0.85[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2850950	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2850952	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2851000	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2851006	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2851008	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3804397	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs756317	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7678617	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102139400-102152000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:102140200-102146600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:102142000-102153200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:102142200-102148000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:102143400-102148800	Weak transcription	Primary B cells from cord blood	blood
6	chr4:102144000-102146600	Enhancers	A549	lung
7	chr4:102144000-102147400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr4:102144000-102148800	Weak transcription	HMEC	breast
9	chr4:102144200-102150000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:102144200-102150800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr4:102144400-102147400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:102144400-102147400	Weak transcription	NHEK	skin
13	chr4:102144600-102151800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr4:102144800-102150000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:102145200-102146200	Enhancers	Small Intestine	intestine
16	chr4:102145400-102146400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr4:102145400-102152000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr4:102145600-102146200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr4:102145600-102146200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr4:102145600-102146200	Enhancers	Fetal Muscle Leg	muscle
21	chr4:102145600-102146200	Enhancers	Psoas Muscle	Psoas
22	chr4:102145800-102146200	Enhancers	Adipose Nuclei	Adipose
23	chr4:102145800-102146200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr4:102145800-102146400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr4:102145800-102147200	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr4:102146000-102146200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:102146000-102146200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr4:102146000-102146200	Enhancers	Gastric	stomach
29	chr4:102146000-102146200	Enhancers	Left Ventricle	heart
30	chr4:102146000-102146400	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr4:102146000-102146400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr4:102146000-102146400	Enhancers	HSMM	muscle
33	chr4:102146000-102147400	Weak transcription	Colon Smooth Muscle	Colon

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