Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11228987	0.85[YRI][hapmap]
rs12296071	1.00[AMR][1000 genomes]
rs1262323	1.00[AMR][1000 genomes]
rs2508769	0.87[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2508771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2511025	0.87[AFR][1000 genomes]
rs2846040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2846043	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2846045	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2846046	0.91[AFR][1000 genomes]
rs2846047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2846048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2851723	0.87[AFR][1000 genomes]
rs481516	1.00[AMR][1000 genomes]
rs499885	0.91[AFR][1000 genomes]
rs501160	1.00[AMR][1000 genomes]
rs546403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs558266	0.87[AFR][1000 genomes]
rs559168	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs578831	0.91[AFR][1000 genomes]
rs639248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs641550	1.00[AMR][1000 genomes]
rs652353	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs655402	0.91[AFR][1000 genomes]
rs656366	0.87[AFR][1000 genomes]
rs670919	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57030600-57036800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:57031000-57037200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:57036600-57037400	Enhancers	Brain Germinal Matrix	brain
4	chr11:57036600-57037600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:57036600-57037600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr11:57036600-57037600	Enhancers	Fetal Kidney	kidney
7	chr11:57036600-57037800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr11:57036600-57038000	Enhancers	Duodenum Mucosa	Duodenum
9	chr11:57036600-57038600	Enhancers	Skeletal Muscle Male	skeletal muscle

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