Variant report

Variant	rs28517624
Chromosome Location	chr14:37529322-37529323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37527584..37529968-chr14:37590390..37592949,2	MCF-7	breast:
2	chr14:37528200..37530680-chr14:37600178..37602513,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10132328	0.91[ASN][1000 genomes]
rs10133673	1.00[ASN][1000 genomes]
rs10136238	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141752	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142021	1.00[ASN][1000 genomes]
rs10220281	0.89[ASN][1000 genomes]
rs10220604	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10483485	1.00[ASN][1000 genomes]
rs12050169	0.88[ASN][1000 genomes]
rs12050463	0.90[ASN][1000 genomes]
rs12889634	0.91[ASN][1000 genomes]
rs17106031	0.86[ASN][1000 genomes]
rs17106189	1.00[ASN][1000 genomes]
rs17106209	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106216	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106275	0.91[ASN][1000 genomes]
rs17106290	0.91[ASN][1000 genomes]
rs17106291	0.91[ASN][1000 genomes]
rs17767749	0.88[EUR][1000 genomes]
rs17841015	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1884220	0.91[ASN][1000 genomes]
rs1884221	0.88[ASN][1000 genomes]
rs1884775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1884777	0.91[ASN][1000 genomes]
rs1950376	0.91[ASN][1000 genomes]
rs1950814	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1955760	0.91[ASN][1000 genomes]
rs1956423	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1956424	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998121	1.00[ASN][1000 genomes]
rs2057171	0.91[ASN][1000 genomes]
rs2415379	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2415380	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28593311	0.94[ASN][1000 genomes]
rs4356385	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7140991	0.94[ASN][1000 genomes]
rs74045463	0.99[ASN][1000 genomes]
rs74045478	0.91[ASN][1000 genomes]
rs8008478	0.91[ASN][1000 genomes]
rs8014186	0.88[ASN][1000 genomes]
rs8017826	0.92[EUR][1000 genomes]
rs8019489	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8020153	0.91[ASN][1000 genomes]
rs976171	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1036201	chr14:37498841-37542041	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037719	chr14:37498841-37546359	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv526786	chr14:37499904-37537352	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1048854	chr14:37505438-37546359	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37526400-37530000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr14:37526600-37529600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr14:37526600-37529800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr14:37526600-37530200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:37527200-37539800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr14:37528600-37530800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr14:37528800-37531200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr14:37529000-37530600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr14:37529000-37530800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr14:37529200-37529400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:37529200-37529600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:37529200-37531600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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