Variant report

Variant	rs28517705
Chromosome Location	chr7:147590338-147590339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10232583	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10234247	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248203	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10249353	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252322	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255352	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261418	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261560	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10263426	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10270982	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281336	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17170710	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17170712	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17170713	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17170715	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17170722	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17170724	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17170728	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28371890	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28407458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58534283	1.00[AMR][1000 genomes]
rs6947415	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3441359	chr7:147585772-147592059	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147589400-147592000	Enhancers	Brain Substantia Nigra	brain
2	chr7:147589600-147591600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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