Variant report

Variant	rs28521216
Chromosome Location	chr18:30865768-30865769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11081796	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12150734	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12150736	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12150837	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1391025	0.81[ASN][1000 genomes]
rs16964459	0.81[ASN][1000 genomes]
rs28374541	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28375135	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28394340	0.81[ASN][1000 genomes]
rs28457646	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28633937	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4319841	0.93[ASN][1000 genomes]
rs4383225	0.81[ASN][1000 genomes]
rs4405623	0.81[ASN][1000 genomes]
rs4432316	0.81[ASN][1000 genomes]
rs4455039	0.81[ASN][1000 genomes]
rs4494628	0.81[ASN][1000 genomes]
rs4505412	0.94[ASN][1000 genomes]
rs4573999	0.81[ASN][1000 genomes]
rs4600534	0.81[ASN][1000 genomes]
rs4630625	0.94[ASN][1000 genomes]
rs4632197	0.81[ASN][1000 genomes]
rs4633796	0.81[ASN][1000 genomes]
rs56168034	0.83[ASN][1000 genomes]
rs56675518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56959895	0.81[ASN][1000 genomes]
rs57082165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57204429	0.83[ASN][1000 genomes]
rs57358360	0.81[ASN][1000 genomes]
rs58448816	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59342170	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66481582	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66560059	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66714151	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67134528	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67274971	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67373469	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67560478	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67772507	0.83[ASN][1000 genomes]
rs67783924	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67881407	0.83[ASN][1000 genomes]
rs68068381	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68190773	0.83[ASN][1000 genomes]
rs72948837	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72948842	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72949130	0.83[ASN][1000 genomes]
rs72951055	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72951085	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7351024	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7351029	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9951961	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9952144	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9953737	0.83[ASN][1000 genomes]
rs9962637	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9962832	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9962884	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909527	chr18:30548902-30908581	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv576640	chr18:30854237-30930418	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	esv3363260	chr18:30855003-30877581	Weak transcription Enhancers Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv576641	chr18:30856949-30930418	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv1063958	chr18:30862717-30931616	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2762000	chr18:30862729-30931628	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3365632	chr18:30864954-30869052	Weak transcription Enhancers Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30863000-30868400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr18:30863200-30868000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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