Variant report

Variant	rs28524171
Chromosome Location	chr5:61519672-61519673
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:61519364..61519935-chr5:61649639..61650264,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10939933	0.82[ASN][1000 genomes]
rs2371220	0.81[ASN][1000 genomes]
rs34721637	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7710751	0.82[ASN][1000 genomes]
rs7710965	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024090	chr5:61258759-61921150	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2757996	chr5:61403138-61687817	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2759345	chr5:61403138-61748912	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv830318	chr5:61415713-61623320	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1020255	chr5:61451792-62031365	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv1027539	chr5:61457762-62000008	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	esv11317	chr5:61501951-61555756	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv821303	chr5:61501951-61555756	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1817691	chr5:61508758-61537518	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1830053	chr5:61510046-61550324	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv10702	chr5:61510435-61552062	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv964860	chr5:61510512-61548253	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv1826874	chr5:61512183-61552823	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1830196	chr5:61512352-61548378	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61518400-61519800	Weak transcription	K562	blood
2	chr5:61518600-61519800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:61519000-61520000	Weak transcription	HepG2	liver
4	chr5:61519200-61519800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:61519200-61520000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:61519200-61520000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:61519200-61520200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:61519400-61519800	Active TSS	Primary monocytes fromperipheralblood	blood
9	chr5:61519400-61519800	Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr5:61519400-61519800	Active TSS	Primary B cells from peripheral blood	blood
11	chr5:61519400-61519800	Active TSS	Primary T cells fromperipheralblood	blood
12	chr5:61519400-61519800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chr5:61519400-61519800	Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr5:61519400-61519800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
15	chr5:61519400-61519800	Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr5:61519400-61519800	Active TSS	Adipose Nuclei	Adipose
17	chr5:61519400-61519800	Active TSS	Brain Hippocampus Middle	brain
18	chr5:61519400-61519800	Active TSS	Fetal Muscle Leg	muscle
19	chr5:61519400-61520000	Active TSS	Primary T cells from cord blood	blood
20	chr5:61519400-61520000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr5:61519400-61520000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr5:61519400-61520000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
23	chr5:61519400-61520000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr5:61519400-61520000	Active TSS	Right Ventricle	heart
25	chr5:61519400-61520000	Active TSS	HUVEC	blood vessel
26	chr5:61519400-61520000	Active TSS	Monocytes-CD14+_RO01746	blood
27	chr5:61519400-61520200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:61519400-61520200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr5:61519400-61520200	Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr5:61519400-61520400	Active TSS	Osteobl	bone
31	chr5:61519600-61519800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
32	chr5:61519600-61520000	Active TSS	Primary hematopoietic stem cells	blood
33	chr5:61519600-61520000	Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chr5:61519600-61520000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr5:61519600-61520000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr5:61519600-61520000	Active TSS	Thymus	Thymus
37	chr5:61519600-61520200	Active TSS	Fetal Intestine Small	intestine
38	chr5:61519600-61520200	Active TSS	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links