The 2.0 version of rSNPBase

Variant report

Variant rs28525291
Chromosome Location chr1:220961196-220961197
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220959000-220962000 Flanking Active TSS Adipose Nuclei Adipose
2 chr1:220959200-220962600 Enhancers Fetal Brain Male brain
3 chr1:220959400-220961200 Active TSS Brain Anterior Caudate brain
4 chr1:220959400-220961400 Active TSS ES-I3 Cell Line embryonic stem cell
5 chr1:220959400-220961800 Active TSS HUES64 Cell Line embryonic stem cell
6 chr1:220959600-220961200 Active TSS H9 Cell Line embryonic stem cell
7 chr1:220959600-220961200 Active TSS HUES48 Cell Line embryonic stem cell
8 chr1:220959600-220961200 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr1:220959600-220961200 Active TSS Pancreatic Islets Pancreatic Islet
10 chr1:220959600-220961400 Active TSS HUES6 Cell Line embryonic stem cell
11 chr1:220959600-220961400 Active TSS iPS-15b Cell Line embryonic stem cell
12 chr1:220959600-220961400 Active TSS iPS-18 Cell Line embryonic stem cell
13 chr1:220959600-220961400 Active TSS iPS-20b Cell Line embryonic stem cell
14 chr1:220959600-220961400 Active TSS Brain Angular Gyrus brain
15 chr1:220959600-220961400 Active TSS Duodenum Smooth Muscle Duodenum
16 chr1:220959600-220961600 Active TSS HepG2 liver
17 chr1:220959600-220961800 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr1:220959800-220961200 Active TSS ES-UCSF4 Cell Line embryonic stem cell
19 chr1:220959800-220961600 Active TSS Brain Germinal Matrix brain
20 chr1:220959800-220961600 Active TSS Brain Dorsolateral Prefrontal Cortex brain
21 chr1:220959800-220961800 Active TSS Rectal Smooth Muscle rectum
22 chr1:220960000-220961400 Active TSS H1 Cell Line embryonic stem cell
23 chr1:220960000-220961600 Active TSS Fetal Brain Female brain
24 chr1:220960000-220961600 Active TSS Rectal Mucosa Donor 29 rectum
25 chr1:220960000-220962000 Active TSS Hela-S3 cervix
26 chr1:220960200-220961200 Active TSS Fetal Intestine Large intestine
27 chr1:220960200-220961400 Active TSS Duodenum Mucosa Duodenum
28 chr1:220960400-220961600 Flanking Active TSS Colonic Mucosa Colon
29 chr1:220960400-220961800 Flanking Active TSS Liver Liver
30 chr1:220960600-220961200 Flanking Bivalent TSS/Enh Fetal Stomach stomach
31 chr1:220960600-220962600 Flanking Active TSS Monocytes-CD14+_RO01746 blood
32 chr1:220960600-220964800 Flanking Active TSS Primary neutrophils fromperipheralblood blood
33 chr1:220960800-220961200 Active TSS Primary hematopoietic stem cells blood
34 chr1:220960800-220961200 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr1:220960800-220961200 Flanking Active TSS Colon Smooth Muscle Colon
36 chr1:220960800-220961600 Flanking Active TSS Primary monocytes fromperipheralblood blood
37 chr1:220960800-220964000 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr1:220960800-220964400 Weak transcription Lung lung
39 chr1:220960800-220965200 Weak transcription Small Intestine intestine
40 chr1:220961000-220961200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr1:220961000-220961200 Flanking Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
42 chr1:220961000-220961200 Bivalent Enhancer hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
43 chr1:220961000-220961200 Flanking Active TSS iPS DF 19.11 Cell Line embryonic stem cell
44 chr1:220961000-220961200 Enhancers Breast Myoepithelial Primary Cells Breast
45 chr1:220961000-220961200 Flanking Active TSS Primary B cells from cord blood blood
46 chr1:220961000-220961200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
47 chr1:220961000-220961200 Enhancers Brain Hippocampus Middle brain
48 chr1:220961000-220961200 Active TSS Brain Inferior Temporal Lobe brain
49 chr1:220961000-220961200 Flanking Active TSS Fetal Intestine Small intestine
50 chr1:220961000-220961200 Enhancers Placenta Placenta

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Last update: Aug 31, 2015