Variant report

Variant	rs2852607
Chromosome Location	chr6:102479736-102479737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:102476206..102478938-chr6:102479367..102481927,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1223042	0.80[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs1310715	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs13190892	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13191478	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13191957	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13195038	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13197158	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13197283	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13199079	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13200524	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13201987	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13203019	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13203156	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13208276	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs13210850	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13210976	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13211215	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13215171	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13216974	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13218403	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1335022	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1335024	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1335029	0.84[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs1335031	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs1335032	0.83[CEU][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1335033	0.83[CEU][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2023599	0.84[CEU][hapmap];0.86[JPT][hapmap]
rs2399584	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2518146	0.85[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap]
rs2518148	0.83[CEU][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2518150	0.85[JPT][hapmap]
rs2782908	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2782916	0.86[CEU][hapmap]
rs2782917	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2782920	0.85[JPT][hapmap]
rs2782922	0.81[JPT][hapmap]
rs2782929	0.80[CHB][hapmap];0.80[JPT][hapmap]
rs2852608	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs2852610	0.85[JPT][hapmap]
rs2852611	0.85[JPT][hapmap]
rs2852612	0.81[JPT][hapmap]
rs35306110	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35697470	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62423079	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62423081	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62423082	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66829771	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs67501069	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7738614	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7749722	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7756449	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs9485585	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs9498801	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs966953	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs995639	0.84[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap]
rs995640	0.83[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2756012	chr6:102428797-102489159	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1022069	chr6:102470600-102598244	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv529294	chr6:102474505-103122745	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links