Variant report

Variant	rs2852608
Chromosome Location	chr6:102481399-102481400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:102476206..102478938-chr6:102479367..102481927,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1223042	0.82[CHB][hapmap]
rs13191478	0.81[JPT][hapmap]
rs13195038	0.81[JPT][hapmap]
rs13199079	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs13200524	0.81[JPT][hapmap]
rs13203156	0.81[JPT][hapmap]
rs13208276	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs13218403	0.81[JPT][hapmap]
rs1335022	0.81[JPT][hapmap]
rs1335024	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1335029	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1335031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1335032	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1335033	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1413965	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2023599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2399584	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs2518146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2518148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2518150	0.95[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs2782908	0.82[CHB][hapmap]
rs2782916	1.00[CEU][hapmap]
rs2782917	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2782920	0.86[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs2782922	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2782929	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2852607	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs2852610	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2852611	0.95[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs2852612	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7738614	0.82[ASW][hapmap];0.81[JPT][hapmap];0.86[YRI][hapmap]
rs7749722	0.81[JPT][hapmap]
rs7756449	0.81[JPT][hapmap]
rs9485585	0.82[ASW][hapmap];0.81[JPT][hapmap];0.86[YRI][hapmap]
rs9498801	0.81[JPT][hapmap]
rs966953	0.82[CHB][hapmap]
rs995639	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs995640	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2756012	chr6:102428797-102489159	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1022069	chr6:102470600-102598244	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv529294	chr6:102474505-103122745	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2852608	SFRS18	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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