Variant report

Variant	rs2852610
Chromosome Location	chr6:102491771-102491772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13195038	0.80[JPT][hapmap]
rs13199079	0.80[JPT][hapmap]
rs13200524	0.81[JPT][hapmap]
rs13203156	0.80[JPT][hapmap]
rs13208276	0.81[JPT][hapmap]
rs13218403	0.80[JPT][hapmap]
rs1335022	0.80[JPT][hapmap]
rs1335024	0.80[JPT][hapmap]
rs1335029	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1335031	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs1335032	0.86[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1335033	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1413965	0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.86[YRI][hapmap]
rs2023599	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2399584	0.81[JPT][hapmap]
rs2518146	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2518148	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2518150	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2782916	0.86[CEU][hapmap]
rs2782917	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2782920	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2782922	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2782929	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2852607	0.85[JPT][hapmap]
rs2852608	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2852611	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2852612	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7738614	0.80[JPT][hapmap]
rs7749722	0.80[JPT][hapmap]
rs7756449	0.80[JPT][hapmap]
rs9485585	0.80[JPT][hapmap]
rs9498801	0.81[JPT][hapmap]
rs995639	0.86[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs995640	0.90[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1022069	chr6:102470600-102598244	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv529294	chr6:102474505-103122745	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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