Variant report

Variant	rs28526655
Chromosome Location	chr7:104491331-104491332
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10085831	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10258340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28465113	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4073643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4144809	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57624778	0.82[EUR][1000 genomes]
rs59449150	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6944796	0.85[EUR][1000 genomes]
rs71562617	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73184012	0.97[EUR][1000 genomes]
rs73184014	0.81[EUR][1000 genomes]
rs73184016	0.82[EUR][1000 genomes]
rs73184018	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5887	chr7:104401250-104491604	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104476400-104503000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:104481600-104514400	Weak transcription	Fetal Kidney	kidney
3	chr7:104483600-104493000	Weak transcription	Pancreas	Pancrea
4	chr7:104486200-104492800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:104486600-104492600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:104487800-104491400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:104489000-104492400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr7:104489000-104493400	Weak transcription	Fetal Intestine Large	intestine
9	chr7:104489000-104493800	Weak transcription	Fetal Brain Male	brain
10	chr7:104489000-104494400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:104489200-104492400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr7:104489400-104492200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:104490000-104492200	Weak transcription	Fetal Intestine Small	intestine
14	chr7:104490800-104491800	Enhancers	GM12878-XiMat	blood
15	chr7:104491000-104492400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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