Variant report

Variant	rs28529791
Chromosome Location	chr4:86556177-86556178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10002160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12504294	0.85[AFR][1000 genomes]
rs1384132	0.85[AFR][1000 genomes]
rs1600840	0.85[AFR][1000 genomes]
rs2086575	0.80[AFR][1000 genomes]
rs2128185	0.82[AFR][1000 genomes]
rs28379426	0.83[AMR][1000 genomes]
rs28455507	1.00[AMR][1000 genomes]
rs28481407	0.85[AFR][1000 genomes]
rs28509264	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28591585	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28673773	0.83[AMR][1000 genomes]
rs2869374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28836878	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4693725	0.85[AFR][1000 genomes]
rs57664680	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62317215	0.83[AFR][1000 genomes]
rs6531846	0.82[AFR][1000 genomes]
rs73833402	0.92[AFR][1000 genomes]
rs7669207	0.83[AFR][1000 genomes]
rs7669879	0.82[AFR][1000 genomes]
rs7689508	0.85[AFR][1000 genomes]
rs7698610	0.82[AFR][1000 genomes]
rs9307006	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9307009	1.00[AMR][1000 genomes]
rs9996348	0.81[AFR][1000 genomes]
rs9997730	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86525600-86559200	Weak transcription	HSMM	muscle
2	chr4:86551400-86575200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:86551800-86561200	Weak transcription	Left Ventricle	heart
4	chr4:86551800-86569600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:86552400-86557600	Weak transcription	Primary B cells from cord blood	blood
6	chr4:86554000-86558600	Weak transcription	HSMMtube	muscle
7	chr4:86555800-86556600	Strong transcription	Primary B cells from peripheral blood	blood

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