Variant report

Variant	rs28535691
Chromosome Location	chr8:11358898-11358899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:11358894..11362536-chr8:11363129..11366232,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28626552	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1022074	chr8:11292256-11394526	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11352200-11360400	Weak transcription	Spleen	Spleen
2	chr8:11353200-11361000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr8:11353400-11367200	Enhancers	Fetal Thymus	thymus
4	chr8:11355800-11359200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr8:11356800-11359200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr8:11356800-11361200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr8:11357200-11359000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr8:11357200-11359000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr8:11357400-11359000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr8:11357400-11359000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr8:11357400-11359200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:11357400-11380000	Genic enhancers	Primary B cells from peripheral blood	blood
13	chr8:11357600-11359000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr8:11357600-11359200	Weak transcription	NHEK	skin
15	chr8:11357800-11359000	Weak transcription	NHDF-Ad	bronchial
16	chr8:11357800-11359200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:11357800-11359200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:11357800-11363400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr8:11357800-11366600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:11358000-11361400	Enhancers	Thymus	Thymus
21	chr8:11358000-11364200	Genic enhancers	Primary B cells from cord blood	blood
22	chr8:11358800-11359000	Flanking Active TSS	GM12878-XiMat	blood
23	chr8:11358800-11359200	Enhancers	Primary T cells from cord blood	blood
24	chr8:11358800-11359400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:11358800-11359600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr8:11358800-11359600	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr8:11358800-11359600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr8:11358800-11360000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr8:11358800-11360200	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr8:11358800-11360400	Flanking Active TSS	Dnd41	blood
31	chr8:11358800-11361800	Enhancers	Primary T cells fromperipheralblood	blood

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