Variant report

Variant	rs28537080
Chromosome Location	chr7:6358197-6358198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10216162	1.00[AMR][1000 genomes]
rs10231220	1.00[AMR][1000 genomes]
rs10234437	1.00[AMR][1000 genomes]
rs10238614	1.00[AMR][1000 genomes]
rs10244599	1.00[AMR][1000 genomes]
rs10247424	1.00[AMR][1000 genomes]
rs10248223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255608	1.00[AMR][1000 genomes]
rs17151489	1.00[AMR][1000 genomes]
rs28429454	1.00[AMR][1000 genomes]
rs28546422	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948912	chr7:5803903-6623553	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
3	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
4	nsv1028242	chr7:5819084-6645024	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
5	nsv538712	chr7:5819084-6645024	Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
6	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
7	nsv1021037	chr7:6070792-6426966	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
8	nsv538713	chr7:6070792-6426966	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	nsv530989	chr7:6176729-6438197	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv482829	chr7:6231809-6407606	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv1032987	chr7:6246313-6373054	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv538714	chr7:6246313-6373054	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv1020236	chr7:6248930-6690377	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
14	nsv497874	chr7:6296768-6614902	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv538715	chr7:6308902-6359025	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv1020251	chr7:6309528-6379941	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv971129	chr7:6335095-6361668	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv1025381	chr7:6356704-6409818	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6357000-6358400	Enhancers	Fetal Muscle Trunk	muscle
2	chr7:6357200-6358200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:6357200-6358200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:6357200-6358200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:6357200-6358200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
6	chr7:6357200-6358200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:6357200-6358200	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr7:6357200-6358200	Enhancers	Colon Smooth Muscle	Colon
9	chr7:6357200-6358200	Enhancers	HUVEC	blood vessel
10	chr7:6357400-6358200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:6357400-6358200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:6357400-6358200	Enhancers	Primary B cells from cord blood	blood
13	chr7:6357400-6358200	Enhancers	Primary B cells from peripheral blood	blood
14	chr7:6357400-6358200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:6357400-6358200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:6357400-6358200	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr7:6357400-6358200	Enhancers	Fetal Stomach	stomach
18	chr7:6357400-6358200	Enhancers	Lung	lung
19	chr7:6357400-6358200	Enhancers	HSMM	muscle
20	chr7:6357400-6358400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:6357600-6358200	Active TSS	Stomach Smooth Muscle	stomach
22	chr7:6357800-6358200	Enhancers	Right Atrium	heart
23	chr7:6357800-6358200	Enhancers	NHLF	lung
24	chr7:6357800-6358400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr7:6357800-6358400	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr7:6357800-6368800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr7:6357800-6369200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr7:6357800-6369200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr7:6357800-6369400	Weak transcription	Brain Anterior Caudate	brain
30	chr7:6357800-6369400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr7:6357800-6369600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr7:6357800-6369600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr7:6357800-6369600	Weak transcription	Fetal Thymus	thymus
34	chr7:6357800-6369800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr7:6357800-6369800	Weak transcription	HSMMtube	muscle
36	chr7:6357800-6370200	Weak transcription	Fetal Intestine Small	intestine
37	chr7:6357800-6386200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr7:6358000-6358200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr7:6358000-6358200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr7:6358000-6358200	Enhancers	Ovary	ovary
41	chr7:6358000-6358200	Enhancers	Rectal Smooth Muscle	rectum
42	chr7:6358000-6358200	Enhancers	Small Intestine	intestine
43	chr7:6358000-6358200	Enhancers	HepG2	liver
44	chr7:6358000-6358200	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr7:6358000-6358200	Enhancers	NH-A	brain
46	chr7:6358000-6358200	Enhancers	Osteobl	bone
47	chr7:6358000-6358400	Enhancers	Primary hematopoietic stem cells	blood
48	chr7:6358000-6358400	Enhancers	Fetal Muscle Leg	muscle
49	chr7:6358000-6358400	Enhancers	Left Ventricle	heart
50	chr7:6358000-6360400	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links