The 2.0 version of rSNPBase

Variant report

Variant rs28538047
Chromosome Location chr15:34472873-34472874
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:34453600-34474600 Weak transcription Colon Smooth Muscle Colon
2 chr15:34454000-34477400 Weak transcription HSMM muscle
3 chr15:34454200-34497800 Weak transcription Osteobl bone
4 chr15:34454600-34501200 Weak transcription Colonic Mucosa Colon
5 chr15:34454800-34501000 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr15:34459000-34478400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
7 chr15:34464600-34500400 Weak transcription Hela-S3 cervix
8 chr15:34464800-34477000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr15:34465000-34477800 Weak transcription Thymus Thymus
10 chr15:34466400-34500400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr15:34466600-34473400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr15:34466600-34482800 Weak transcription NHDF-Ad bronchial
13 chr15:34466800-34475200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr15:34466800-34477400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr15:34466800-34477600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr15:34466800-34477600 Weak transcription Primary B cells from cord blood blood
17 chr15:34467000-34475200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr15:34467000-34477200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr15:34467000-34500800 Weak transcription Primary T helper cells fromperipheralblood blood
20 chr15:34467200-34478400 Weak transcription Lung lung
21 chr15:34467200-34491400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
22 chr15:34467200-34500200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr15:34467400-34486200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
24 chr15:34468000-34478400 Weak transcription Dnd41 blood
25 chr15:34468000-34496400 Weak transcription Fetal Lung lung
26 chr15:34468000-34497800 Weak transcription NHEK skin
27 chr15:34468200-34475200 Weak transcription A549 lung
28 chr15:34468200-34478200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr15:34468200-34485800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
30 chr15:34468200-34498000 Weak transcription Primary T regulatory cells fromperipheralblood blood
31 chr15:34468400-34477000 Weak transcription Primary T cells from cord blood blood
32 chr15:34468600-34475400 Weak transcription Placenta Placenta
33 chr15:34468600-34480600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr15:34468800-34477400 Weak transcription Fetal Stomach stomach
35 chr15:34469200-34477200 Weak transcription Fetal Muscle Leg muscle
36 chr15:34469600-34475200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr15:34469800-34475200 Weak transcription Left Ventricle heart
38 chr15:34470200-34474600 Weak transcription HUVEC blood vessel
39 chr15:34470200-34475200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
40 chr15:34470200-34477400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr15:34470400-34477800 Weak transcription Primary hematopoietic stem cells short term culture blood
42 chr15:34471000-34473200 Enhancers Brain Hippocampus Middle brain
43 chr15:34471000-34501000 Weak transcription Aorta Aorta
44 chr15:34471200-34473000 Enhancers Brain Anterior Caudate brain
45 chr15:34471200-34473000 Enhancers Brain Substantia Nigra brain
46 chr15:34471400-34481000 Weak transcription Brain Angular Gyrus brain
47 chr15:34471600-34473000 Enhancers HepG2 liver
48 chr15:34471600-34500400 Weak transcription Duodenum Smooth Muscle Duodenum
49 chr15:34471800-34477400 Weak transcription Primary hematopoietic stem cells blood
50 chr15:34472200-34473200 Enhancers Cortex derived primary cultured neurospheres brain

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Last update: Aug 31, 2015