Variant report
| Variant | rs28539319 |
|---|---|
| Chromosome Location | chr4:69056495-69056496 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:69050039..69052225-chr4:69055143..69056998,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000250026 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs10006271 | 1.00[AMR][1000 genomes] |
| rs10014409 | 1.00[AMR][1000 genomes] |
| rs10020493 | 1.00[AMR][1000 genomes] |
| rs10021670 | 1.00[AMR][1000 genomes] |
| rs10024896 | 1.00[AMR][1000 genomes] |
| rs11942344 | 1.00[AMR][1000 genomes] |
| rs11942378 | 1.00[AMR][1000 genomes] |
| rs17089175 | 1.00[AMR][1000 genomes] |
| rs17089201 | 1.00[AMR][1000 genomes] |
| rs17089205 | 1.00[AMR][1000 genomes] |
| rs17089208 | 1.00[AMR][1000 genomes] |
| rs2319801 | 1.00[AMR][1000 genomes] |
| rs2319802 | 1.00[AMR][1000 genomes] |
| rs28403934 | 1.00[AMR][1000 genomes] |
| rs28408073 | 1.00[AMR][1000 genomes] |
| rs28410736 | 1.00[AMR][1000 genomes] |
| rs28515192 | 1.00[AMR][1000 genomes] |
| rs28578038 | 1.00[AMR][1000 genomes] |
| rs28582887 | 1.00[AMR][1000 genomes] |
| rs28648604 | 1.00[AMR][1000 genomes] |
| rs28674479 | 1.00[AMR][1000 genomes] |
| rs28701106 | 1.00[AMR][1000 genomes] |
| rs28731370 | 1.00[AMR][1000 genomes] |
| rs2874082 | 1.00[AMR][1000 genomes] |
| rs28873764 | 1.00[AMR][1000 genomes] |
| rs35341131 | 1.00[AMR][1000 genomes] |
| rs4259127 | 1.00[AMR][1000 genomes] |
| rs4307039 | 1.00[AMR][1000 genomes] |
| rs4307040 | 1.00[AMR][1000 genomes] |
| rs4423941 | 1.00[AMR][1000 genomes] |
| rs4431295 | 1.00[AMR][1000 genomes] |
| rs4569822 | 1.00[AMR][1000 genomes] |
| rs4607294 | 1.00[AMR][1000 genomes] |
| rs6823555 | 1.00[AMR][1000 genomes] |
| rs9312194 | 1.00[AMR][1000 genomes] |
| rs953289 | 1.00[AMR][1000 genomes] |
| rs9985745 | 1.00[AMR][1000 genomes] |
| rs9985874 | 1.00[AMR][1000 genomes] |
| rs9994398 | 1.00[AMR][1000 genomes] |
| rs9998367 | 1.00[AMR][1000 genomes] |
| rs9999835 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008084 | chr4:68797598-69482831 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
| 2 | nsv537131 | chr4:68797598-69482831 | Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
| 3 | esv1812438 | chr4:68943858-69154222 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 4 | esv1806586 | chr4:68943858-69592846 | ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| 5 | nsv4371 | chr4:69046637-69081620 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv461546 | chr4:69049643-69223057 | Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 7 | nsv594506 | chr4:69049643-69223057 | Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
