Variant report

Variant	rs28544981
Chromosome Location	chr11:17166270-17166271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17165805..17167971-chr11:17170717..17172780,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11024138	0.83[AFR][1000 genomes]
rs11024168	1.00[AFR][1000 genomes]
rs11024169	0.91[AFR][1000 genomes]
rs11024170	1.00[AFR][1000 genomes]
rs11024172	1.00[AFR][1000 genomes]
rs11024176	1.00[AFR][1000 genomes]
rs11024177	1.00[AFR][1000 genomes]
rs12275377	1.00[AFR][1000 genomes]
rs12283841	1.00[AFR][1000 genomes]
rs12285914	0.83[AFR][1000 genomes]
rs12287127	1.00[AFR][1000 genomes]
rs12288475	1.00[AFR][1000 genomes]
rs12289881	1.00[AFR][1000 genomes]
rs12291395	0.83[AFR][1000 genomes]
rs12292965	0.83[AFR][1000 genomes]
rs61761999	0.84[AFR][1000 genomes]
rs61762000	0.91[AFR][1000 genomes]
rs61763070	0.83[AFR][1000 genomes]
rs61763087	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv7691	chr11:17151593-17196894	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17105400-17172800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:17107000-17167200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:17108200-17177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:17108600-17172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:17111600-17182000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:17120400-17181600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:17120800-17171800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:17120800-17172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:17121000-17178000	Weak transcription	Psoas Muscle	Psoas
10	chr11:17125400-17172200	Weak transcription	Fetal Brain Male	brain
11	chr11:17125800-17181400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr11:17126800-17186400	Weak transcription	Colonic Mucosa	Colon
13	chr11:17130200-17174600	Weak transcription	Spleen	Spleen
14	chr11:17130200-17203800	Weak transcription	Aorta	Aorta
15	chr11:17132000-17167800	Weak transcription	Right Ventricle	heart
16	chr11:17139000-17171200	Weak transcription	Fetal Brain Female	brain
17	chr11:17140000-17183400	Weak transcription	Small Intestine	intestine
18	chr11:17144200-17192800	Weak transcription	NHDF-Ad	bronchial
19	chr11:17144600-17166600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr11:17150800-17172000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:17150800-17186000	Weak transcription	NHLF	lung
22	chr11:17151000-17173200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:17154600-17166600	Weak transcription	Ovary	ovary
24	chr11:17155000-17166600	Weak transcription	Fetal Kidney	kidney
25	chr11:17156400-17186400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr11:17156400-17186600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:17156600-17166800	Weak transcription	Thymus	Thymus
28	chr11:17156600-17167200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr11:17156600-17168000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr11:17156600-17172600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:17156600-17172800	Weak transcription	Brain Angular Gyrus	brain
32	chr11:17156600-17175400	Weak transcription	Esophagus	oesophagus
33	chr11:17156600-17180800	Weak transcription	Colon Smooth Muscle	Colon
34	chr11:17156600-17182400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr11:17156600-17183600	Weak transcription	Lung	lung
36	chr11:17156600-17219200	Weak transcription	HSMMtube	muscle
37	chr11:17156800-17172200	Weak transcription	Brain Hippocampus Middle	brain
38	chr11:17156800-17181000	Weak transcription	Brain Germinal Matrix	brain
39	chr11:17157000-17175400	Weak transcription	K562	blood
40	chr11:17157200-17167200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr11:17157600-17166600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr11:17158000-17215600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:17158600-17173200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:17159000-17166600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr11:17159400-17176000	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr11:17159800-17173200	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr11:17160000-17167600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:17160000-17170000	Strong transcription	Primary T cells from cord blood	blood
49	chr11:17160000-17170600	Strong transcription	Fetal Intestine Large	intestine
50	chr11:17160400-17167200	Weak transcription	Fetal Heart	heart

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