Variant report

Variant	rs28546463
Chromosome Location	chr8:10813125-10813126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10811750..10814627-chr8:10819721..10822751,3	K562	blood:
2	chr8:10811750..10814627-chr8:10819721..10822021,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10086778	1.00[ASN][1000 genomes]
rs10086872	1.00[ASN][1000 genomes]
rs10087376	0.82[ASN][1000 genomes]
rs10094007	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10094337	0.83[AMR][1000 genomes]
rs10094684	0.82[ASN][1000 genomes]
rs10095039	0.82[ASN][1000 genomes]
rs10095261	0.82[ASN][1000 genomes]
rs10095390	0.82[ASN][1000 genomes]
rs10096624	1.00[ASN][1000 genomes]
rs10096634	0.83[AMR][1000 genomes]
rs10096872	0.82[ASN][1000 genomes]
rs10097626	0.82[ASN][1000 genomes]
rs10098549	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101503	0.82[ASN][1000 genomes]
rs10106574	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10107544	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10107591	1.00[ASN][1000 genomes]
rs10107658	0.82[ASN][1000 genomes]
rs10111178	0.83[AMR][1000 genomes]
rs10112255	0.83[AMR][1000 genomes]
rs10903334	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11250096	1.00[ASN][1000 genomes]
rs11783935	0.82[ASN][1000 genomes]
rs11985330	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11990141	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11995188	0.90[ASN][1000 genomes]
rs11996961	1.00[ASN][1000 genomes]
rs28542689	1.00[ASN][1000 genomes]
rs28712086	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4265148	1.00[ASN][1000 genomes]
rs4434585	0.82[ASN][1000 genomes]
rs4623374	1.00[ASN][1000 genomes]
rs4626559	0.89[ASN][1000 genomes]
rs4645525	1.00[ASN][1000 genomes]
rs4840527	1.00[ASN][1000 genomes]
rs55958006	1.00[ASN][1000 genomes]
rs56048959	0.82[ASN][1000 genomes]
rs57698321	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601540	1.00[ASN][1000 genomes]
rs6982751	1.00[ASN][1000 genomes]
rs6982927	1.00[ASN][1000 genomes]
rs7006612	1.00[ASN][1000 genomes]
rs7008460	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv522127	chr8:10797831-10815515	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv521721	chr8:10802102-10836472	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv519822	chr8:10803617-10815515	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv518360	chr8:10805015-10816873	Enhancers Bivalent Enhancer Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10807400-10818200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:10810400-10818200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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