Variant report

Variant	rs28546829
Chromosome Location	chr14:65757913-65757914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10047886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10130270	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10131095	0.89[AFR][1000 genomes]
rs10132304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135430	0.89[AFR][1000 genomes]
rs10135555	0.89[AFR][1000 genomes]
rs10136600	0.89[AFR][1000 genomes]
rs10137961	0.89[AFR][1000 genomes]
rs10138521	0.89[AFR][1000 genomes]
rs10142126	0.89[AFR][1000 genomes]
rs10142520	0.89[AFR][1000 genomes]
rs10143378	0.89[AFR][1000 genomes]
rs10143537	0.89[AFR][1000 genomes]
rs10148449	0.89[AFR][1000 genomes]
rs10149224	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150033	0.89[AFR][1000 genomes]
rs10150248	0.89[AFR][1000 genomes]
rs10150722	0.89[AFR][1000 genomes]
rs10151906	0.89[AFR][1000 genomes]
rs1679884	1.00[AMR][1000 genomes]
rs17102622	0.89[AFR][1000 genomes]
rs1871746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2152376	0.89[AFR][1000 genomes]
rs28425716	1.00[AMR][1000 genomes]
rs28438882	0.89[AFR][1000 genomes]
rs28459646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28462250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28482071	0.89[AFR][1000 genomes]
rs28489429	0.89[AFR][1000 genomes]
rs28503629	1.00[AMR][1000 genomes]
rs28533687	1.00[AMR][1000 genomes]
rs28550810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28583895	0.89[AFR][1000 genomes]
rs28591212	1.00[AMR][1000 genomes]
rs28649307	1.00[AMR][1000 genomes]
rs28649429	1.00[AMR][1000 genomes]
rs28654875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28708772	0.89[AFR][1000 genomes]
rs9323458	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	nsv515522	chr14:65746566-65771110	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65747600-65758400	Weak transcription	Pancreas	Pancrea
2	chr14:65753200-65760000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:65753200-65760200	Enhancers	Primary B cells from peripheral blood	blood
4	chr14:65753400-65759800	Enhancers	Primary hematopoietic stem cells	blood
5	chr14:65753600-65760000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr14:65754600-65758200	Weak transcription	Brain Substantia Nigra	brain
7	chr14:65754600-65758400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr14:65754600-65758400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr14:65754600-65758400	Weak transcription	Spleen	Spleen
10	chr14:65754600-65758600	Weak transcription	Colonic Mucosa	Colon
11	chr14:65754600-65759800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr14:65754600-65768600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:65754800-65758400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr14:65754800-65764400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr14:65755000-65759600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr14:65755000-65759800	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr14:65755000-65760000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr14:65755200-65759600	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr14:65755200-65760000	Enhancers	Primary T cells fromperipheralblood	blood
20	chr14:65755800-65758600	Enhancers	NHDF-Ad	bronchial
21	chr14:65755800-65760000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr14:65756000-65758200	Weak transcription	Gastric	stomach
23	chr14:65756000-65758600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:65756000-65759800	Enhancers	Primary T cells from cord blood	blood
25	chr14:65756000-65760000	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr14:65756200-65759600	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr14:65756400-65759000	Enhancers	NH-A	brain
28	chr14:65756600-65759000	Enhancers	HMEC	breast
29	chr14:65756600-65759800	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr14:65756800-65758200	Enhancers	HSMM	muscle
31	chr14:65756800-65758600	Enhancers	Osteobl	bone
32	chr14:65756800-65758800	Enhancers	HSMMtube	muscle
33	chr14:65757000-65758000	Enhancers	NHLF	lung
34	chr14:65757000-65760200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr14:65757200-65758200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr14:65757200-65759000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr14:65757600-65758400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr14:65757600-65758800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr14:65757600-65760000	Enhancers	Primary B cells from cord blood	blood
40	chr14:65757800-65758400	Enhancers	Muscle Satellite Cultured Cells	--
41	chr14:65757800-65758400	Flanking Active TSS	GM12878-XiMat	blood
42	chr14:65757800-65758600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr14:65757800-65758600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr14:65757800-65758800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr14:65757800-65758800	Enhancers	NHEK	skin
46	chr14:65757800-65759000	Enhancers	Fetal Thymus	thymus
47	chr14:65757800-65759000	Enhancers	Thymus	Thymus
48	chr14:65757800-65759200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr14:65757800-65759600	Enhancers	Stomach Mucosa	stomach

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