Variant report

Variant	rs28548892
Chromosome Location	chr3:23324485-23324486
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs17013009	1.00[AMR][1000 genomes]
rs17013099	1.00[AMR][1000 genomes]
rs28567933	1.00[AMR][1000 genomes]
rs28641973	1.00[AMR][1000 genomes]
rs57747253	1.00[AMR][1000 genomes]
rs58047209	1.00[AMR][1000 genomes]
rs58879825	1.00[AMR][1000 genomes]
rs61081559	1.00[AMR][1000 genomes]
rs61500565	1.00[AMR][1000 genomes]
rs61636332	1.00[AMR][1000 genomes]
rs6768277	1.00[AMR][1000 genomes]
rs6795043	1.00[AMR][1000 genomes]
rs73138415	1.00[AMR][1000 genomes]
rs73138434	1.00[AMR][1000 genomes]
rs73138436	1.00[AMR][1000 genomes]
rs73138449	1.00[AMR][1000 genomes]
rs73138480	1.00[AMR][1000 genomes]
rs73138490	1.00[AMR][1000 genomes]
rs73138492	1.00[AMR][1000 genomes]
rs73140509	1.00[AMR][1000 genomes]
rs73140514	1.00[AMR][1000 genomes]
rs73149654	1.00[AMR][1000 genomes]
rs73149686	1.00[AMR][1000 genomes]
rs73149689	1.00[AMR][1000 genomes]
rs7634565	1.00[AMR][1000 genomes]
rs7646028	1.00[AMR][1000 genomes]
rs7652287	1.00[AMR][1000 genomes]
rs9310716	1.00[AMR][1000 genomes]
rs9681506	1.00[AMR][1000 genomes]
rs9809364	1.00[AMR][1000 genomes]
rs9810378	1.00[AMR][1000 genomes]
rs9811442	1.00[AMR][1000 genomes]
rs9819566	1.00[AMR][1000 genomes]
rs9819788	1.00[AMR][1000 genomes]
rs9821681	1.00[AMR][1000 genomes]
rs9829577	1.00[AMR][1000 genomes]
rs9834737	1.00[AMR][1000 genomes]
rs9842159	1.00[AMR][1000 genomes]
rs9845340	1.00[AMR][1000 genomes]
rs9852053	1.00[AMR][1000 genomes]
rs9861614	1.00[AMR][1000 genomes]
rs9866889	1.00[AMR][1000 genomes]
rs9869171	1.00[AMR][1000 genomes]
rs9878638	1.00[AMR][1000 genomes]
rs9879132	1.00[AMR][1000 genomes]
rs9879217	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004417	chr3:23318797-23389422	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23298800-23336600	Weak transcription	Thymus	Thymus
2	chr3:23314400-23330400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:23316800-23328000	Weak transcription	Primary B cells from cord blood	blood
4	chr3:23317600-23324800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:23321000-23329800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:23321600-23332600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:23322600-23330800	Weak transcription	Aorta	Aorta
8	chr3:23324400-23324600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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