Variant report

Variant	rs28551701
Chromosome Location	chr7:104503342-104503343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10271917	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12111933	1.00[EUR][1000 genomes]
rs73713046	1.00[EUR][1000 genomes]
rs73714133	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104481600-104514400	Weak transcription	Fetal Kidney	kidney
2	chr7:104501600-104503400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:104501600-104504800	Strong transcription	Fetal Intestine Small	intestine
4	chr7:104502600-104504000	Weak transcription	Pancreas	Pancrea
5	chr7:104502800-104503400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:104502800-104503600	Strong transcription	Fetal Intestine Large	intestine
7	chr7:104503000-104505000	ZNF genes & repeats	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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