Variant report

Variant	rs28552087
Chromosome Location	chr8:118371681-118371682
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10095593	1.00[AMR][1000 genomes]
rs10096601	1.00[AMR][1000 genomes]
rs10100736	1.00[AMR][1000 genomes]
rs10104240	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10107653	1.00[AMR][1000 genomes]
rs10109096	1.00[AMR][1000 genomes]
rs1489405	1.00[AMR][1000 genomes]
rs16889760	1.00[AMR][1000 genomes]
rs16889831	1.00[AMR][1000 genomes]
rs16892788	1.00[AMR][1000 genomes]
rs2171717	1.00[AMR][1000 genomes]
rs28373245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28397875	1.00[AMR][1000 genomes]
rs28439173	1.00[AMR][1000 genomes]
rs28442252	1.00[AMR][1000 genomes]
rs28492056	1.00[AMR][1000 genomes]
rs28583342	1.00[AMR][1000 genomes]
rs28612338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28664811	1.00[AMR][1000 genomes]
rs28757759	1.00[AMR][1000 genomes]
rs57987063	1.00[AMR][1000 genomes]
rs73310404	1.00[AMR][1000 genomes]
rs73321547	1.00[AMR][1000 genomes]
rs73321569	1.00[AMR][1000 genomes]
rs73321581	1.00[AMR][1000 genomes]
rs73321583	1.00[AMR][1000 genomes]
rs73323222	1.00[AMR][1000 genomes]
rs73325255	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9656916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027039	chr8:118143762-118460954	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831435	chr8:118266417-118466651	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118369200-118373000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr8:118369400-118372200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr8:118371400-118371800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:118371400-118372600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr8:118371400-118372800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr8:118371400-118372800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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