Variant report

Variant	rs28556805
Chromosome Location	chr15:53148685-53148686
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12232305	0.90[ASN][1000 genomes]
rs16965222	0.93[ASN][1000 genomes]
rs17709181	0.91[ASN][1000 genomes]
rs2120440	0.86[ASN][1000 genomes]
rs2120441	0.92[ASN][1000 genomes]
rs2456509	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2456510	0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs28415452	0.90[ASN][1000 genomes]
rs28449533	0.93[ASN][1000 genomes]
rs28489650	0.90[ASN][1000 genomes]
rs28566485	0.88[ASN][1000 genomes]
rs28624935	0.84[ASN][1000 genomes]
rs28713382	0.91[ASN][1000 genomes]
rs56346629	0.88[ASN][1000 genomes]
rs56710422	0.84[ASN][1000 genomes]
rs57960122	0.85[ASN][1000 genomes]
rs58028943	0.86[ASN][1000 genomes]
rs60407782	0.84[ASN][1000 genomes]
rs60882420	0.84[ASN][1000 genomes]
rs61364465	0.88[ASN][1000 genomes]
rs6493586	0.90[ASN][1000 genomes]
rs7176412	0.89[ASN][1000 genomes]
rs731607	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53147000-53149800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:53147600-53148800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr15:53147600-53148800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr15:53147600-53149200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:53147800-53148800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:53148400-53148800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr15:53148400-53151400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:53148600-53148800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr15:53148600-53148800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:53148600-53148800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr15:53148600-53149200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:53148600-53151000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links