Variant report

Variant	rs28557454
Chromosome Location	chr7:127078289-127078290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10230771	0.97[ASN][1000 genomes]
rs10243114	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10243337	0.81[ASN][1000 genomes]
rs10243876	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10269088	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10279764	0.97[ASN][1000 genomes]
rs10808228	0.97[ASN][1000 genomes]
rs10954150	0.97[ASN][1000 genomes]
rs11772370	0.88[ASN][1000 genomes]
rs12706789	0.97[ASN][1000 genomes]
rs12706790	0.97[ASN][1000 genomes]
rs1419404	0.88[ASN][1000 genomes]
rs17150883	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867129	0.85[ASN][1000 genomes]
rs17867253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1833067	0.97[ASN][1000 genomes]
rs2157749	0.97[ASN][1000 genomes]
rs4731360	0.97[ASN][1000 genomes]
rs4731361	0.97[ASN][1000 genomes]
rs4731362	0.97[ASN][1000 genomes]
rs55850145	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60267009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60630803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60908730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808943	0.97[ASN][1000 genomes]
rs7809156	0.97[ASN][1000 genomes]
rs7809187	0.97[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127077200-127078600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:127077400-127078400	Weak transcription	Placenta	Placenta
3	chr7:127077400-127078600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:127077400-127078600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:127077400-127078600	Enhancers	NH-A	brain
6	chr7:127077400-127079000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:127077400-127079200	Enhancers	HSMMtube	muscle
8	chr7:127077400-127079400	Enhancers	NHLF	lung
9	chr7:127077400-127079800	Enhancers	HSMM	muscle
10	chr7:127077600-127078400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:127077600-127078600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:127077600-127078600	Enhancers	HMEC	breast
13	chr7:127077600-127078600	Enhancers	NHDF-Ad	bronchial
14	chr7:127077800-127078400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:127077800-127078400	Enhancers	NHEK	skin
16	chr7:127078000-127078400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:127078000-127078400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:127078000-127078600	Flanking Active TSS	Osteobl	bone
19	chr7:127078200-127078600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr7:127078200-127078600	Enhancers	A549	lung
21	chr7:127078200-127078600	Enhancers	Hela-S3	cervix

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