Variant report

Variant	rs28564354
Chromosome Location	chr8:130146176-130146177
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10088545	0.86[AFR][1000 genomes]
rs10091200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10105749	0.86[AFR][1000 genomes]
rs10107730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12335336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28478914	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28736354	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2761241	chr8:130139946-130146557	Genic enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130126400-130160600	Weak transcription	Fetal Thymus	thymus
2	chr8:130146000-130158800	Genic enhancers	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links