Variant report

Variant	rs28565882
Chromosome Location	chr7:138272914-138272915
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138271648..138273851-chr7:138275084..138276648,2	K562	blood:
2	chr7:138272442..138274593-chr7:138278540..138281503,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11976228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11981542	0.86[ASN][1000 genomes]
rs13438568	1.00[EUR][1000 genomes]
rs57441924	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59552958	1.00[ASN][1000 genomes]
rs60367633	0.86[ASN][1000 genomes]
rs6947224	1.00[EUR][1000 genomes]
rs73731231	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138250200-138273800	Weak transcription	Gastric	stomach
2	chr7:138250400-138273000	Strong transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:138250600-138273000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:138250600-138273400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:138250800-138273200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:138251200-138273000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:138251400-138273000	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:138251400-138273000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:138251600-138273200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:138252200-138273000	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr7:138252400-138273000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr7:138254200-138273000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:138256200-138273600	Weak transcription	Brain Substantia Nigra	brain
14	chr7:138256400-138273600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:138256400-138273600	Weak transcription	NHEK	skin
16	chr7:138256400-138274000	Weak transcription	Brain Angular Gyrus	brain
17	chr7:138256400-138276600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr7:138257400-138274200	Weak transcription	HSMMtube	muscle
19	chr7:138260600-138273000	Strong transcription	Fetal Brain Female	brain
20	chr7:138264600-138274200	Weak transcription	Ovary	ovary
21	chr7:138264800-138274000	Weak transcription	Colonic Mucosa	Colon
22	chr7:138265200-138274000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr7:138265400-138273600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr7:138265400-138274000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr7:138265400-138276800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr7:138266200-138275600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:138267000-138273800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr7:138267000-138274400	Weak transcription	Fetal Lung	lung
29	chr7:138267200-138273600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr7:138267400-138273400	Strong transcription	Primary T cells from cord blood	blood
31	chr7:138267800-138274000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr7:138267800-138274400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr7:138268000-138273000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr7:138269000-138273000	Strong transcription	Fetal Kidney	kidney
35	chr7:138269200-138273800	Weak transcription	HSMM	muscle
36	chr7:138270400-138274000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr7:138270400-138274000	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr7:138270400-138274000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr7:138270600-138273200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr7:138270600-138273800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr7:138270600-138273800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr7:138270600-138274000	Weak transcription	Primary B cells from cord blood	blood
43	chr7:138270600-138274000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr7:138270600-138274000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr7:138270600-138274400	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr7:138270800-138273200	Weak transcription	HepG2	liver
47	chr7:138270800-138273800	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr7:138270800-138274000	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr7:138270800-138274000	Weak transcription	Adipose Nuclei	Adipose
50	chr7:138270800-138274800	Weak transcription	GM12878-XiMat	blood

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