Variant report

Variant	rs28566811
Chromosome Location	chr4:86831111-86831112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10006104	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10018236	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10026288	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1016510	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11930286	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12651053	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1467072	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473009	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473011	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510580	0.89[EUR][1000 genomes]
rs1510582	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011166	0.95[ASN][1000 genomes]
rs17011172	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011185	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1848917	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1961436	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28572751	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28713621	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2904082	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2904083	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61561733	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6531877	0.89[EUR][1000 genomes]
rs6531882	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6810816	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6811531	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6819930	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6820175	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6824722	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6850630	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6851522	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654702	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7663884	0.93[ASN][1000 genomes]
rs7666429	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7669712	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7685704	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7690939	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7692633	0.89[EUR][1000 genomes]
rs7692989	0.89[EUR][1000 genomes]
rs7693039	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7699391	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9307011	0.86[EUR][1000 genomes]
rs9307013	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs958887	0.94[ASN][1000 genomes]
rs9790433	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753470	chr4:86804078-86844350	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879520	chr4:86829529-86918232	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86790800-86835400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:86791200-86844400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:86808200-86846000	Weak transcription	HUVEC	blood vessel
4	chr4:86812200-86831200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr4:86815800-86842800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:86818400-86831200	Weak transcription	Right Ventricle	heart
7	chr4:86823800-86832400	Weak transcription	NHDF-Ad	bronchial
8	chr4:86826800-86845400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:86827400-86834200	Weak transcription	Stomach Mucosa	stomach
10	chr4:86827600-86835400	Weak transcription	Small Intestine	intestine
11	chr4:86827600-86850600	Weak transcription	Spleen	Spleen
12	chr4:86828200-86831200	Weak transcription	Ovary	ovary
13	chr4:86828800-86834000	Weak transcription	Fetal Intestine Large	intestine
14	chr4:86828800-86834200	Weak transcription	Fetal Intestine Small	intestine
15	chr4:86829600-86843800	Weak transcription	Primary B cells from cord blood	blood
16	chr4:86830600-86831600	Enhancers	Adipose Nuclei	Adipose
17	chr4:86830800-86834400	Weak transcription	Fetal Kidney	kidney
18	chr4:86831000-86831200	Enhancers	Aorta	Aorta
19	chr4:86831000-86831200	Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr4:86831000-86831400	Enhancers	Left Ventricle	heart
21	chr4:86831000-86831400	Enhancers	Lung	lung
22	chr4:86831000-86831400	Enhancers	Right Atrium	heart
23	chr4:86831000-86831400	Enhancers	HMEC	breast
24	chr4:86831000-86831600	Active TSS	Duodenum Mucosa	Duodenum
25	chr4:86831000-86831600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr4:86831000-86831800	Enhancers	Brain Anterior Caudate	brain
27	chr4:86831000-86832000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr4:86831000-86832200	Enhancers	Fetal Muscle Leg	muscle
29	chr4:86831000-86832400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr4:86831000-86832400	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr4:86831000-86832400	Enhancers	Fetal Muscle Trunk	muscle
32	chr4:86831000-86832400	Enhancers	Pancreas	Pancrea
33	chr4:86831000-86832600	Enhancers	Gastric	stomach

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