Variant report

Variant	rs28566988
Chromosome Location	chr8:10786379-10786380
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:10786051..10786569-chr8:10873648..10874515,2	MCF-7	breast:
2	chr8:10770919..10772954-chr8:10785860..10787582,2	K562	blood:
3	chr8:10785251..10786661-chr8:10833873..10835317,10	K562	blood:
4	chr8:10444778..10445703-chr8:10786032..10786596,2	MCF-7	breast:
5	chr8:10696576..10697375-chr8:10786004..10786544,2	K562	blood:
6	chr8:10785842..10786445-chr8:11136734..11137559,2	MCF-7	breast:
7	chr8:10785773..10786613-chr8:10826278..10826960,2	MCF-7	breast:
8	chr8:10785690..10786544-chr8:10913111..10914143,3	MCF-7	breast:
9	chr8:10785719..10786553-chr8:10802895..10803663,2	K562	blood:
10	chr8:10784899..10786604-chr8:10834371..10835572,13	MCF-7	breast:
11	chr8:10785658..10786600-chr8:10834375..10835298,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254093	Chromatin interaction
ENSG00000258724	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12156345	0.88[AMR][1000 genomes]
rs56043061	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73192809	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73196838	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73209947	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1025190	chr8:10756331-10802566	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10785400-10786600	Enhancers	Brain Anterior Caudate	brain
2	chr8:10785600-10786400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:10785600-10786400	Enhancers	Brain Germinal Matrix	brain
4	chr8:10785600-10786400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr8:10785600-10786400	Enhancers	Gastric	stomach
6	chr8:10785600-10786600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:10785600-10786600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr8:10785600-10786800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:10785600-10786800	Enhancers	Brain Angular Gyrus	brain
10	chr8:10785600-10786800	Enhancers	HMEC	breast
11	chr8:10785600-10787200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr8:10785800-10786400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:10785800-10786400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:10785800-10786400	Enhancers	Primary B cells from peripheral blood	blood
15	chr8:10785800-10786400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr8:10785800-10786400	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr8:10785800-10786400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr8:10785800-10786400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr8:10785800-10786400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr8:10785800-10786400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:10785800-10786400	Enhancers	Brain Cingulate Gyrus	brain
22	chr8:10785800-10786400	Enhancers	Brain Substantia Nigra	brain
23	chr8:10785800-10786400	Enhancers	Esophagus	oesophagus
24	chr8:10785800-10786400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
25	chr8:10785800-10786400	Enhancers	Fetal Brain Male	brain
26	chr8:10785800-10786400	Active TSS	Fetal Brain Female	brain
27	chr8:10785800-10786400	Bivalent Enhancer	Fetal Intestine Small	intestine
28	chr8:10785800-10786400	Bivalent Enhancer	Fetal Stomach	stomach
29	chr8:10785800-10786400	Enhancers	Lung	lung
30	chr8:10785800-10786400	Enhancers	GM12878-XiMat	blood
31	chr8:10785800-10786600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr8:10785800-10786600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr8:10785800-10786600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
34	chr8:10785800-10786600	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr8:10785800-10786600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
36	chr8:10785800-10786600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr8:10785800-10786600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr8:10785800-10786600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr8:10785800-10786600	Enhancers	Adipose Nuclei	Adipose
40	chr8:10785800-10786600	Enhancers	Left Ventricle	heart
41	chr8:10785800-10786600	Enhancers	Pancreas	Pancrea
42	chr8:10785800-10786600	Enhancers	Right Ventricle	heart
43	chr8:10785800-10786600	Enhancers	Spleen	Spleen
44	chr8:10786000-10786400	Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr8:10786000-10786600	Enhancers	H1 Cell Line	embryonic stem cell
46	chr8:10786000-10786600	Active TSS	iPS-20b Cell Line	embryonic stem cell
47	chr8:10786000-10786600	Enhancers	Placenta	Placenta
48	chr8:10786000-10786600	Flanking Active TSS	Stomach Smooth Muscle	stomach
49	chr8:10786200-10786400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
50	chr8:10786200-10786400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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