Variant report

Variant	rs28568576
Chromosome Location	chr4:86528699-86528700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10003508	1.00[AMR][1000 genomes]
rs10003616	1.00[AMR][1000 genomes]
rs10006491	1.00[AMR][1000 genomes]
rs10009042	1.00[AMR][1000 genomes]
rs10009686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10015628	1.00[AMR][1000 genomes]
rs10016029	1.00[AMR][1000 genomes]
rs10016153	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10020940	1.00[AMR][1000 genomes]
rs10023579	1.00[AMR][1000 genomes]
rs10030914	1.00[AMR][1000 genomes]
rs10031920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10033604	1.00[AMR][1000 genomes]
rs13434500	1.00[AMR][1000 genomes]
rs13435619	1.00[AMR][1000 genomes]
rs28380594	1.00[AMR][1000 genomes]
rs28385277	1.00[AMR][1000 genomes]
rs28385531	1.00[AMR][1000 genomes]
rs28404254	1.00[AMR][1000 genomes]
rs28416247	1.00[AMR][1000 genomes]
rs28417307	1.00[AMR][1000 genomes]
rs28446374	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28463959	1.00[AMR][1000 genomes]
rs28483739	1.00[AMR][1000 genomes]
rs28493605	1.00[AMR][1000 genomes]
rs28542843	1.00[AMR][1000 genomes]
rs28556771	1.00[AMR][1000 genomes]
rs28585433	1.00[AMR][1000 genomes]
rs28607329	1.00[AMR][1000 genomes]
rs28618270	1.00[AMR][1000 genomes]
rs28645081	1.00[AMR][1000 genomes]
rs28652904	1.00[AMR][1000 genomes]
rs28663637	1.00[AMR][1000 genomes]
rs28671522	1.00[AMR][1000 genomes]
rs28708671	1.00[AMR][1000 genomes]
rs28733613	1.00[AMR][1000 genomes]
rs72976713	1.00[AMR][1000 genomes]
rs72976727	1.00[AMR][1000 genomes]
rs9996146	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86517800-86542200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:86525400-86530800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:86525600-86559200	Weak transcription	HSMM	muscle
4	chr4:86526000-86536600	Weak transcription	Left Ventricle	heart
5	chr4:86527000-86533200	Enhancers	Primary B cells from peripheral blood	blood
6	chr4:86527800-86529200	Enhancers	Stomach Mucosa	stomach
7	chr4:86528000-86528800	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr4:86528000-86528800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:86528200-86528800	Enhancers	Primary hematopoietic stem cells	blood
10	chr4:86528200-86529200	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr4:86528400-86528800	Flanking Active TSS	GM12878-XiMat	blood
12	chr4:86528400-86529200	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr4:86528400-86553600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:86528600-86536200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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