Variant report

Variant	rs28571055
Chromosome Location	chr14:66267108-66267109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65878097..65879607-chr14:66264869..66267520,2	MCF-7	breast:
2	chr14:66262965..66265183-chr14:66266765..66269639,2	MCF-7	breast:
3	chr14:66265298..66267312-chr14:66388199..66390774,2	K562	blood:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10083327	1.00[AMR][1000 genomes]
rs10083356	1.00[AMR][1000 genomes]
rs10131616	1.00[AMR][1000 genomes]
rs10132138	1.00[AMR][1000 genomes]
rs10132575	1.00[AMR][1000 genomes]
rs10134109	1.00[AMR][1000 genomes]
rs10138881	1.00[AMR][1000 genomes]
rs10139190	1.00[AMR][1000 genomes]
rs10139892	1.00[AMR][1000 genomes]
rs10140494	1.00[AMR][1000 genomes]
rs10141632	1.00[AMR][1000 genomes]
rs10143944	1.00[AMR][1000 genomes]
rs10144478	1.00[AMR][1000 genomes]
rs10144701	1.00[AMR][1000 genomes]
rs10145479	1.00[AMR][1000 genomes]
rs10146253	1.00[AMR][1000 genomes]
rs10147262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10162357	1.00[AMR][1000 genomes]
rs10162579	1.00[AMR][1000 genomes]
rs10220481	1.00[AMR][1000 genomes]
rs28375638	1.00[AMR][1000 genomes]
rs28399233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28415772	1.00[AMR][1000 genomes]
rs28452937	1.00[AMR][1000 genomes]
rs28612256	1.00[AMR][1000 genomes]
rs28682570	1.00[AMR][1000 genomes]
rs28716649	1.00[AMR][1000 genomes]
rs28789509	1.00[AMR][1000 genomes]
rs28808905	1.00[AMR][1000 genomes]
rs57330939	1.00[AMR][1000 genomes]
rs73286159	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
2	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv817409	chr14:66220075-66990168	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
8	nsv1052389	chr14:66255781-66321562	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv456328	chr14:66259394-66287974	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv564952	chr14:66259394-66287974	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1038849	chr14:66259700-66329919	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66258800-66268800	Weak transcription	H9 Cell Line	embryonic stem cell

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