Variant report

Variant	rs28576569
Chromosome Location	chr4:143406936-143406937
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10002270	1.00[AMR][1000 genomes]
rs28786807	0.82[AFR][1000 genomes]
rs58333696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7675844	1.00[AMR][1000 genomes]
rs9992455	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143369200-143410600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:143397400-143414800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:143401800-143418600	Weak transcription	Fetal Heart	heart
4	chr4:143405800-143407200	Enhancers	Primary T cells from cord blood	blood
5	chr4:143406000-143407000	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr4:143406000-143407200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr4:143406000-143407400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr4:143406200-143407200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr4:143406200-143407400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr4:143406200-143407400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:143406200-143407400	Enhancers	Fetal Intestine Small	intestine
12	chr4:143406400-143407200	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr4:143406400-143407200	Enhancers	Fetal Intestine Large	intestine
14	chr4:143406400-143407400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr4:143406400-143407600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr4:143406800-143407000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr4:143406800-143407200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:143406800-143407400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links