Variant report

Variant	rs28577267
Chromosome Location	chr7:103871724-103871725
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103858966..103860906-chr7:103867973..103872038,3	K562	blood:
2	chr7:103871547..103872530-chr7:104558465..104559716,7	K562	blood:
3	chr7:103846534..103850528-chr7:103863639..103871951,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164815	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10235201	0.83[AMR][1000 genomes]
rs10250235	0.83[AMR][1000 genomes]
rs10255806	0.83[AMR][1000 genomes]
rs10266337	0.83[AMR][1000 genomes]
rs10267412	0.83[AMR][1000 genomes]
rs10271923	0.83[AMR][1000 genomes]
rs10276243	0.83[AMR][1000 genomes]
rs10487192	0.83[AMR][1000 genomes]
rs28644319	0.83[AMR][1000 genomes]
rs28820003	0.83[AMR][1000 genomes]
rs58842751	0.83[AMR][1000 genomes]
rs6948021	0.83[AMR][1000 genomes]
rs6954109	0.83[AMR][1000 genomes]
rs73413894	0.83[AMR][1000 genomes]
rs73415704	0.83[AMR][1000 genomes]
rs73415717	0.83[AMR][1000 genomes]
rs73415730	0.83[AMR][1000 genomes]
rs73417705	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019640	chr7:103813522-103884705	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
2	nsv1026481	chr7:103813522-103890770	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	esv2762692	chr7:103813522-103890782	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
4	nsv526062	chr7:103817597-103891085	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
5	nsv608065	chr7:103817597-103990755	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
6	nsv1029571	chr7:103855890-103909757	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv608066	chr7:103861035-103916484	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv429789	chr7:103862259-103909757	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103865200-103871800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:103870000-103871800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:103870000-103871800	Weak transcription	Stomach Mucosa	stomach
4	chr7:103870800-103872400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:103871000-103871800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr7:103871000-103871800	Enhancers	HSMMtube	muscle
7	chr7:103871000-103872400	Enhancers	Fetal Brain Male	brain
8	chr7:103871000-103872400	Enhancers	Fetal Stomach	stomach
9	chr7:103871000-103872800	Enhancers	Fetal Lung	lung
10	chr7:103871200-103871800	Flanking Active TSS	Brain Germinal Matrix	brain
11	chr7:103871200-103872000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
12	chr7:103871400-103872000	Flanking Active TSS	Fetal Muscle Trunk	muscle
13	chr7:103871400-103872000	Enhancers	Spleen	Spleen
14	chr7:103871600-103871800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:103871600-103871800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:103871600-103871800	Enhancers	Brain Angular Gyrus	brain
17	chr7:103871600-103871800	Active TSS	Brain Anterior Caudate	brain
18	chr7:103871600-103871800	Active TSS	Brain Cingulate Gyrus	brain
19	chr7:103871600-103871800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr7:103871600-103871800	Weak transcription	NH-A	brain
21	chr7:103871600-103872000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
22	chr7:103871600-103872000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
23	chr7:103871600-103872000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:103871600-103872000	Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chr7:103871600-103872000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr7:103871600-103872000	Flanking Active TSS	Brain Hippocampus Middle	brain
27	chr7:103871600-103872000	Flanking Active TSS	Fetal Brain Female	brain
28	chr7:103871600-103872000	Flanking Active TSS	Fetal Muscle Leg	muscle
29	chr7:103871600-103872000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
30	chr7:103871600-103872000	Flanking Active TSS	HSMM	muscle
31	chr7:103871600-103872400	Enhancers	H1 Cell Line	embryonic stem cell
32	chr7:103871600-103872400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:103871600-103872400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr7:103871600-103872400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr7:103871600-103872400	Enhancers	Brain Substantia Nigra	brain
36	chr7:103871600-103872600	Enhancers	Ovary	ovary

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