Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr2:11862945-11863162	HepG2	liver:	n/a	chr2:11863045-11863059
2	FOXA1	chr2:11862756-11863282	HepG2	liver:	n/a	n/a
3	FOXA1	chr2:11862965-11863155	T-47D	breast:	n/a	n/a
4	FOS	chr2:11862921-11863126	MCF10A-Er-Src	breast:	n/a	n/a
5	FOXA1	chr2:11862918-11863326	HepG2	liver:	n/a	n/a
6	FOXA1	chr2:11862796-11863271	HepG2	liver:	n/a	n/a
7	FOXA2	chr2:11862919-11863239	HepG2	liver:	n/a	n/a
8	FOXA1	chr2:11862761-11863325	HepG2	liver:	n/a	n/a
9	CEBPB	chr2:11862797-11863288	MCF-7	breast:	n/a	chr2:11863044-11863055
10	CEBPB	chr2:11862910-11863201	HepG2	liver:	n/a	chr2:11863044-11863055
11	CEBPB	chr2:11862843-11863155	HepG2	liver:	n/a	chr2:11863044-11863055
12	CEBPB	chr2:11862950-11863144	HepG2	liver:	n/a	chr2:11863044-11863055
13	MYC	chr2:11862978-11863212	MCF10A-Er-Src	breast:	n/a	chr2:11863023-11863034
14	CEBPB	chr2:11862875-11863232	HepG2	liver:	n/a	chr2:11863044-11863055
15	MYC	chr2:11862922-11863200	MCF10A-Er-Src	breast:	n/a	chr2:11863023-11863034
16	CEBPB	chr2:11862938-11863286	MCF-7	breast:	n/a	chr2:11863044-11863055
17	MAX	chr2:11862791-11863302	HepG2	liver:	n/a	chr2:11863023-11863034
18	JUND	chr2:11862902-11863186	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
LPIN1	TF binding region

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11890286	0.89[ASN][1000 genomes]
rs13418215	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13421506	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55676775	0.89[ASN][1000 genomes]
rs56858654	0.89[ASN][1000 genomes]
rs57456819	0.89[ASN][1000 genomes]
rs58273936	0.89[ASN][1000 genomes]
rs59502453	0.89[ASN][1000 genomes]
rs59838011	0.89[ASN][1000 genomes]
rs61410870	0.89[ASN][1000 genomes]
rs61430487	0.89[ASN][1000 genomes]
rs6432234	0.89[ASN][1000 genomes]
rs67334974	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73177496	0.89[ASN][1000 genomes]
rs73179361	0.89[ASN][1000 genomes]
rs73179363	0.89[ASN][1000 genomes]
rs73179396	0.89[ASN][1000 genomes]
rs73179398	0.89[ASN][1000 genomes]
rs7556803	0.89[ASN][1000 genomes]
rs7580386	0.89[ASN][1000 genomes]
rs7580501	0.89[ASN][1000 genomes]
rs7581186	0.89[ASN][1000 genomes]
rs7581192	0.89[ASN][1000 genomes]
rs7583977	0.89[ASN][1000 genomes]
rs7583991	0.89[ASN][1000 genomes]
rs7594198	0.89[ASN][1000 genomes]
rs7594406	0.89[ASN][1000 genomes]
rs7597552	0.89[ASN][1000 genomes]
rs7597790	0.89[ASN][1000 genomes]
rs7598255	0.89[ASN][1000 genomes]
rs7598525	0.89[ASN][1000 genomes]
rs7601181	0.89[ASN][1000 genomes]
rs7606137	0.89[ASN][1000 genomes]
rs7606378	0.89[ASN][1000 genomes]
rs7606724	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11861000-11864400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:11861200-11866200	Weak transcription	Right Atrium	heart
3	chr2:11862200-11863600	Enhancers	Liver	Liver
4	chr2:11862400-11863200	Enhancers	Brain Anterior Caudate	brain
5	chr2:11862400-11863400	Bivalent Enhancer	HepG2	liver

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