Variant report

Variant	rs28587189
Chromosome Location	chr7:104534666-104534667
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104530363..104532505-chr7:104533626..104535586,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10216243	0.84[ASN][1000 genomes]
rs10226456	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10226802	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10227564	0.81[ASN][1000 genomes]
rs10235696	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10236552	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10237433	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10238498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10243336	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10243529	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10247246	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10247944	0.81[ASN][1000 genomes]
rs10250365	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10253341	0.93[ASN][1000 genomes]
rs10257360	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10259925	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10262655	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10264318	0.81[ASN][1000 genomes]
rs10266362	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10272668	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10273609	0.99[ASN][1000 genomes]
rs10274240	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10280365	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10281485	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10953454	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10953455	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10953457	0.84[ASN][1000 genomes]
rs12534673	0.82[ASN][1000 genomes]
rs12535201	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12537945	0.88[ASN][1000 genomes]
rs12670275	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12672211	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12705281	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12705282	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12705285	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13225632	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13228977	0.83[ASN][1000 genomes]
rs1468813	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17777379	0.85[EUR][1000 genomes]
rs17777439	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2285533	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28478615	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28546781	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34083033	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34171467	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34439336	0.85[EUR][1000 genomes]
rs34508498	0.81[ASN][1000 genomes]
rs35146170	0.85[EUR][1000 genomes]
rs35324592	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35337480	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35756879	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35894637	0.93[ASN][1000 genomes]
rs35988800	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4351347	0.82[ASN][1000 genomes]
rs6949139	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6968540	0.92[ASN][1000 genomes]
rs71562620	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7779117	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7781864	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv981792	chr7:104524351-104538104	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104524800-104535200	Weak transcription	Colonic Mucosa	Colon
2	chr7:104524800-104540800	Weak transcription	Brain Anterior Caudate	brain
3	chr7:104525400-104540400	Weak transcription	Brain Substantia Nigra	brain
4	chr7:104527800-104539600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:104531400-104541800	Weak transcription	Pancreas	Pancrea
6	chr7:104531400-104542000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:104532400-104535000	Weak transcription	Fetal Intestine Large	intestine
8	chr7:104534400-104537000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr7:104534400-104537200	Genic enhancers	Fetal Intestine Small	intestine
10	chr7:104534600-104534800	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr7:104534600-104535000	Strong transcription	Fetal Kidney	kidney
12	chr7:104534600-104538200	Enhancers	Duodenum Mucosa	Duodenum
13	chr7:104534600-104538400	Flanking Active TSS	GM12878-XiMat	blood

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