Variant report

Variant	rs28587485
Chromosome Location	chr7:137784095-137784096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10227099	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10229164	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10230284	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10230440	1.00[AMR][1000 genomes]
rs10231078	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10236488	1.00[AMR][1000 genomes]
rs10258807	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260689	1.00[AMR][1000 genomes]
rs10263802	1.00[AMR][1000 genomes]
rs10264483	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275029	0.88[AFR][1000 genomes]
rs10276854	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10276951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279265	1.00[AMR][1000 genomes]
rs17169511	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28547527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7799130	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv831151	chr7:137711447-137865471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137776600-137790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:137782800-137802400	Strong transcription	Liver	Liver
3	chr7:137783200-137785000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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