Variant report

Variant	rs28590250
Chromosome Location	chr8:63532585-63532586
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:63519763..63521581-chr8:63531929..63534148,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10090181	1.00[EUR][1000 genomes]
rs10093124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10093315	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10094032	1.00[EUR][1000 genomes]
rs10095868	0.91[AFR][1000 genomes]
rs10096226	1.00[EUR][1000 genomes]
rs10101425	1.00[EUR][1000 genomes]
rs10101617	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10106080	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10108125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10108406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10957230	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12334898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439077	1.00[AMR][1000 genomes]
rs16929260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2101047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28392810	0.86[AFR][1000 genomes]
rs28407937	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28570147	0.91[AFR][1000 genomes]
rs28639415	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28666681	1.00[EUR][1000 genomes]
rs28681273	0.87[AFR][1000 genomes]
rs28714560	1.00[EUR][1000 genomes]
rs28728121	0.91[AFR][1000 genomes]
rs28735390	1.00[EUR][1000 genomes]
rs6472041	0.91[AFR][1000 genomes]
rs6988031	0.82[AFR][1000 genomes]
rs6992264	0.91[AFR][1000 genomes]
rs6998590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7000003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7000386	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7004134	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7837461	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7838713	1.00[AMR][1000 genomes]
rs9657077	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890960	chr8:63516962-63629549	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63522600-63532800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63531600-63532800	Weak transcription	Fetal Intestine Small	intestine
3	chr8:63531800-63532800	Weak transcription	Fetal Intestine Large	intestine

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